Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01816 ATGGAAGAAGAAAAAGGCTTGGCAGACAATAAAGGGACAAAGAACGAGGTTGTTCTGCGAATTTTGGGCAGCGAAGAAGCTTCTAGAGGTTCCCCAGTTGCTGAAACCAGTTCCTATTCTCCTCAGCTCAATGCCCATATGAGTTCATCACCAAAAGAGTTCAGAAATTCACGAGCTGAACGCGTTGAGCTTGAGAATCTAGGAAGGGGTCAAGTTTCAACAGAGATGGTGACACCTACTCGTAGGTTGTTGGGTCGTTCAGAGTTTTCAAAGCCAAAGTCAAGAATGTTGGAGCCACCATGTCCAAAAGTTGCAAGCTTTGTTGAAGAGAAGGCTCAAATGAAGAGTTCTAATTCATCTGCAATGAACTCTCCTAACAAGAAGGTTTCAGCAGCTCCTTCTCCAAGGGATGTTCCTGATGCAACTGTTGCTACCCCGCGAACTCCGAGGGAAGAAGAAGAAGATGATGATGATGACGATGATGAAGAAGTGTACAAGACTGCAAATATTGAAGTAAGTAAGAGATCTGGTAAGAAGTGGAAAGTAATGGGTTTGATTGAATGGTTTGCTTTTGTTTTCATTGTGGGGTTTATGATTGCAAGCTTAACGGTCCATAAGTTGCAACATAAGGAAATTTGGGGTTTGGAACTGTGGAAGTGGTGTGTGTTGGCATTGGTCACTCTCTGTGGTAAACTGGTCACTCAGTGGCTTATCAATGTTTTGGTTTTCTTGATTGAAAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTTTATGGTGTGAAGAAGAGTGTTCAGGCCTTTTTATGGTTTAGTTTGGTTCTTTTGGCATGGGGTCTACTTTTCAACCTTGGTGGAGTCAAGAGAACCAGAAAAGTTACAAGGATTCTCAATCATATCACTAGGTCCCTTGCCTCGTTTCTTATTGGATCAGCTATATGGTTAGCAAAAACATTGTTGATAAAGCTATTGGCTTCAAATTTCCAATCTACTAGATTTTTTGATAGGGTTCAAGAATCAATCTTTCATCAGTACATTCTTAGGACTCTTTCAGGCCCTCCCTTGATGGAGATGGCTGAAACAGTAGTCAAGACTTCAAGTAGTGGCCAACTCAGTTTCAGGACCATGTACAGAGACAATGAGAATAAAGGGAAGAAAGAAGAAGTCATAGATATAGATAAGCTAAAGAAAATGAAACAAGAGAAGGTTTCAGCTTGGACCATGAAAGGATTGATTAATGTGATAAGGAGTTCTGGGTTGTCTACCATATCCTATGCTCCAGAGAGTGTTTATGAAGATGAGAGTGACCAGAAAGATAATGAAATTACTAGTGAGTGGGAAGCAAAGGCAGCTGCTTATCGAATTTTCAGGAATGTAGCCAAGCCAGGAAACAAGTACATTGAGAAGGAAGACCTCTTGCGCTTCATGAAATATGAAGAAGTGGAAAATGTGCTTCCACTATTTGAAGGGGCAGTTGAGACTGGAAAAATTAAGAGGAAGACTCTGAAGAACTGGCTGGTGAAAATCTACCTTGAACGTCAATCACTTGTACATTCACTAAATGATACCAAAACAGCCGTTGATGACTTAAATAAACTTGCTTCTGTAATTGTTGTTGTTGTGATCATTATTGTGTGGTTACTTCTAATGGGATTCTTAACTACCCAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTGTTTATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCATTTGACATTGGTGACCGTTGTGTCATTGATGGTGTTCAGATGATTGTAGAAGAGATGAACATACTGTCTACAGTCTTTTTGAGATATGATAATGAAAAGATATTCTACCCAAATTCAGTTCTGACAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCGGTTGAATTTTCTGTTGATGTTTCTACTTCAATAGAAAGTATTGGAGCTTTAAAGGCTAGGTTAAAAGCATACTTGGAGAGTATGCCTCAACACTGGCGTCCAAACCACAGTGTATTGGTTAAGGATATTGAGAATCAACCAAGCAAGGTGATTAAGAAGGATTCGGCTAAGAAGACAGCGAAGAAATCAAGGGTTAAGGCATTCGTGAAGCTGGTGAACTACCAGCACCTGATGCCCACTCGCTACACCCTCGATGTGGATCTTAAGGATGTTGTGTCCCTGGATGCCCTCCACTCCAAGGACAAGAAGGTGACTGCACTCAAAGAGACCAAGAAGCGTTTTGAGGAGAGGTTCAAGACTGGCAAGAATAGGTGGTTCTTCACCAAACTTCGATTCTTCGTCCATGGTTGGTTTCTGCTTCAGGGGAAGAAGATAGTAACAGAGATATGGGGAGGGACGGGAGGGTGA 2418 0.4086 MEEEKGLADNKGTKNEVVLRILGSEEASRGSPVAETSSYSPQLNAHMSSSPKEFRNSRAERVELENLGRGQVSTEMVTPTRRLLGRSEFSKPKSRMLEPPCPKVASFVEEKAQMKSSNSSAMNSPNKKVSAAPSPRDVPDATVATPRTPREEEEDDDDDDDEEVYKTANIEVSKRSGKKWKVMGLIEWFAFVFIVGFMIASLTVHKLQHKEIWGLELWKWCVLALVTLCGKLVTQWLINVLVFLIERNFLFKKKVLYFVYGVKKSVQAFLWFSLVLLAWGLLFNLGGVKRTRKVTRILNHITRSLASFLIGSAIWLAKTLLIKLLASNFQSTRFFDRVQESIFHQYILRTLSGPPLMEMAETVVKTSSSGQLSFRTMYRDNENKGKKEEVIDIDKLKKMKQEKVSAWTMKGLINVIRSSGLSTISYAPESVYEDESDQKDNEITSEWEAKAAAYRIFRNVAKPGNKYIEKEDLLRFMKYEEVENVLPLFEGAVETGKIKRKTLKNWLVKIYLERQSLVHSLNDTKTAVDDLNKLASVIVVVVIIIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDIGDRCVIDGVQMIVEEMNILSTVFLRYDNEKIFYPNSVLTTKPISNFYRSPEMSDSVEFSVDVSTSIESIGALKARLKAYLESMPQHWRPNHSVLVKDIENQPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSLDALHSKDKKVTALKETKKRFEERFKTGKNRWFFTKLRFFVHGWFLLQGKKIVTEIWGGTGG* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01816 805 Gene3D - 592 641 IPR023408 -
Rops11g01816 805 MobiDBLite consensus disorder prediction 22 163 - -
Rops11g01816 805 Pfam Ribosomal L27e protein family 699 782 IPR001141 GO:0003735|GO:0005840|GO:0006412
Rops11g01816 805 SUPERFAMILY Sm-like ribonucleoproteins 582 641 IPR010920 -
Rops11g01816 805 Pfam Mechanosensitive ion channel 532 742 IPR006685 GO:0016020|GO:0055085
Rops11g01816 805 Coils Coil 747 767 - -
Rops11g01816 805 MobiDBLite consensus disorder prediction 30 52 - -
Rops11g01816 805 MobiDBLite consensus disorder prediction 111 130 - -
Rops11g01816 805 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 28 696 IPR016688 -
Rops11g01816 805 FunFam Predicted mechanosensitive ion channel 592 641 - -
Rops11g01816 805 PIRSF Memb_At2g17000 3 702 IPR016688 -
Rops11g01816 805 Gene3D - 671 782 IPR038655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01816 Rops-Chr11 29215823 29221804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01816 22 695 Mechanosensitive Ion Channel Family AT5G12080 50.812 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01816 K22048 - gmx:100777332 1063.91