Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01815 ATGGGTGATGTTCTAAGCCCCTTCACAATCTCATCTCCTCCTCCACCTTTTTCCTCATCAAGCAAGAAGAATAGCATGCCTATGTTATACTATGGCCTAGTGGTGGTGGGAACAGCAGCTATAATACTAGCCATGTACAACCTCATCATAATCAAACGTTGCCACAGGCGCCAAACACAATCACAGGCCGAAGGGCCAAATCAATTGGTTGAAGGGGTACCTGAAAGTAGGAGTTTTGACAACAACCCACAAAGGAACTCACTATCAAGCTTCAAGTACAAGAAGGAAGTGGTGGCAAAAGAGAGAGAAGGAGAAGAGCAACAACAAGGTTGTGATGATGAGTATGATTTTGAATGCCCAGTTTGTTTATCTGTTTATGAAGATGGGGAAGAGGTGAGGAAACTACCACAGTGCAAGCACTCTTTCCATGCTCTTTGCATAGACATGTGGCTTTACTCTCACTTTGATTGCCCAATTTGTAGAACACCAGTTGTGCCTTTTTGTCATAATTTTCCGGCAGAGAATTCTCCTGAGGGGTTGATGGAATCTGGCATCTCTGTTTGA 564 0.4379 MGDVLSPFTISSPPPPFSSSSKKNSMPMLYYGLVVVGTAAIILAMYNLIIIKRCHRRQTQSQAEGPNQLVEGVPESRSFDNNPQRNSLSSFKYKKEVVAKEREGEEQQQGCDDEYDFECPVCLSVYEDGEEVRKLPQCKHSFHALCIDMWLYSHFDCPICRTPVVPFCHNFPAENSPEGLMESGISV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01815 187 MobiDBLite consensus disorder prediction 61 87 - -
Rops11g01815 187 Pfam Ring finger domain 118 161 IPR001841 -
Rops11g01815 187 CDD RING-H2_EL5-like 118 161 - -
Rops11g01815 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 166 IPR013083 -
Rops11g01815 187 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Rops11g01815 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 165 IPR044675 -
Rops11g01815 187 MobiDBLite consensus disorder prediction 1 22 - -
Rops11g01815 187 FunFam RING-H2 finger protein ATL1 67 166 - -
Rops11g01815 187 SUPERFAMILY RING/U-box 118 172 - -
Rops11g01815 187 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01815 Rops-Chr11 29186098 29186889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01815 33 165 C3H Transcription Factor Family AT5G17600 36.957 2.01e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01815 - - aprc:113852327 244.973