Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01811 ATGAAGCCATTTCTCATTTTGAATCATCCTGATACCGAGTTCAATTGTTCCCAAGTTGATCGTAATCACCCAATGGCTTATGCTCCTTATCCTTATGGTGATCCATTTTTTTCTGGTTCATTAGTTGCTTATGGACCACAGGCTGTTAATCAACCCCAAATGTTGCCCCAGATGCTGGGATTAGCATCCACCAGAGTTGCATTACCACTTGATCTAGCACAAGATGGGCCCATTTATGTCAATGCGAAACAATACCATGGTATACTTAGAAGGAGACAATCACGAGCAAAGCTTGAGGCTCAGAACAAACTCATCAAGAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAAAAGAGTTAGAGGATCAGGGGGGCGATTTCTCAGCACCAAAGAGCTTACTCAGTCTAATGCAGAATTTGTGACTGGTGCACATTCTGGCTCTGGCACTATCAGCAAATATCAAAAGAAAGATCCATCAGAGGTGGAAAATCATTCCTCAAAAACTGGAGATAATGCATCTTCCATCACAACCTGCTCCGACCGGACATGTTTATCTGGTAATAGTGTCACTTTTAGACAGCCAGAGCACATGTTTCTGGGGAACTCATCAAACATGGGTGGAGCACTACCACAATGCAGTGGGGGACTCACCTTTGGAGGATCAAAACAACTTGCTTCAGTTGTCCGGTGA 705 0.4426 MKPFLILNHPDTEFNCSQVDRNHPMAYAPYPYGDPFFSGSLVAYGPQAVNQPQMLPQMLGLASTRVALPLDLAQDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSTKELTQSNAEFVTGAHSGSGTISKYQKKDPSEVENHSSKTGDNASSITTCSDRTCLSGNSVTFRQPEHMFLGNSSNMGGALPQCSGGLTFGGSKQLASVVR* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01811 234 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Rops11g01811 234 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Rops11g01811 234 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Rops11g01811 234 Gene3D - 74 136 - -
Rops11g01811 234 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Rops11g01811 234 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Rops11g01811 234 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Rops11g01811 234 MobiDBLite consensus disorder prediction 148 182 - -
Rops11g01811 234 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 188 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01811 Rops-Chr11 29119618 29123578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01811 30 193 CCAAT-HAP2 Transcription Factor Family AT1G17590 48.256 8.49e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops11g01811 CBFB_NFYA 4.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01811 K08064 - gmx:100793856 367.081