Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01803 ATGTCTACTAATAGCAATGCCAAGGAAAAGGATGAGTTTGGCTTGGGTGAAGATGACCATGAGCCTAATGATTTGTCCAACCTGCAGCTACCCGGAATGGACGTGCTCGATGCTCCTGTTGATCTTGGTGGCCAAGGTCAGGATCTTGGTTCATGGTTGAATATTGACGATGATGGATTGCAAGATCATGACCTTATGGGGCTTGAAATTCACATGGATGACCTTTCAGACTTGAATATGATGGGATTCACTATTCATGCCACTGTGAGGAAAACGTTAGTCTATAAGTTTAAGTCCTTACTTGAAGAAGGACAGGTTTATGTAATGGCTTATTTTGGCGTAGGTGAAAATACAGGGAAAAAAGTATTGCAGAATGTCATGTATGGGACTCGGTTGTTGTTTAATCCTGACATTCCAGAAGTATCTGAACTGAGGAATAAGTTGGAGACTTCAACTGCTGATTTGTCTCAAGGATTAAGTGTCATATCTGATTCTCCAAGTTATAGTTTTGAAGAAGATTTTTTAAAAGCAACTCCTCCCAAGTCTATAGAGGAATTAAAGGATTGTAAAGATACTGGATTCTATGCTGTTTTAGCTACCATCAAATCTGTTATCAATGGTCCAGACTGGTGGTATTCAGCTTGCAAATGCAACAAAGTTGTTCATCCCAATTCTGGGATGTACTATTGTGAAAGGATATTGGTTTATGCTTATGGTTTACGGTTGACTCTGTGTTTGATTTTGCTGCTTCAAAGCCATGATGAGCATGTGCTTTATGATGGGTTTGTTATCATTTTATCGGTTTTGCTATTGAATTTTAGAACCTTGAATTGGATGATGGCCGGTTCTTCTTCTTCTTCCCGTCGTCGAAGGTTTCCTATAACTGTTGTTGTGGCCAATATTTCAAACAAGGGCTATGGCATCTTGCCACAAGAATTCAGTGATGAATTCGCGCCTTCAATAGGGTCCTACGCAAAAATTATTACAAAAAAAGGAGATATGTTCGAGGTTGATTTCCGGCTAACAAGCAAAGGGGGTTGTTTTACCCATGGTTGGAGTGATTTTATTAATAAGACTTCTCTACATGGAGTCTCTGATGTCATGCTGAAATACCATGGTTTATTGTGGTTCAAAATGGAAAAAGATGATCAGATTCAAGTAAAAAGAGAAGTTGAACCTGCTTCCATGCATGAAATCAATCTGACTCGCTACTCCATAAAGTTTCAACAGAACCTCCCATATGATTTTGTTGATCAATGTCTTAACTTGAATTGCAACTCGATTACTTTGAAAGTTGAAGATGGGAGATCATGGGACTGCGGATTGTACCATCATCCAGACAGAAACAAAAATGAGGCAAGGATCAACACCGGTTGGAAACAATTTGCCAAAGATTTGAAGCTGAAGACTTATAATCGGATTTTTTTTCAAGTGCTGGAACGTGAAACCAATTTGGTTCTTGCTGTGATTAAATGA 1476 0.3896 MSTNSNAKEKDEFGLGEDDHEPNDLSNLQLPGMDVLDAPVDLGGQGQDLGSWLNIDDDGLQDHDLMGLEIHMDDLSDLNMMGFTIHATVRKTLVYKFKSLLEEGQVYVMAYFGVGENTGKKVLQNVMYGTRLLFNPDIPEVSELRNKLETSTADLSQGLSVISDSPSYSFEEDFLKATPPKSIEELKDCKDTGFYAVLATIKSVINGPDWWYSACKCNKVVHPNSGMYYCERILVYAYGLRLTLCLILLLQSHDEHVLYDGFVIILSVLLLNFRTLNWMMAGSSSSSRRRRFPITVVVANISNKGYGILPQEFSDEFAPSIGSYAKIITKKGDMFEVDFRLTSKGGCFTHGWSDFINKTSLHGVSDVMLKYHGLLWFKMEKDDQIQVKREVEPASMHEINLTRYSIKFQQNLPYDFVDQCLNLNCNSITLKVEDGRSWDCGLYHHPDRNKNEARINTGWKQFAKDLKLKTYNRIFFQVLERETNLVLAVIK* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01803 491 SUPERFAMILY DNA-binding pseudobarrel domain 400 487 IPR015300 -
Rops11g01803 491 MobiDBLite consensus disorder prediction 1 27 - -
Rops11g01803 491 SUPERFAMILY Nucleic acid-binding proteins 80 142 IPR012340 -
Rops11g01803 491 Gene3D - 62 156 IPR012340 -
Rops11g01803 491 PANTHER OS05G0107300 PROTEIN 4 81 - -
Rops11g01803 491 MobiDBLite consensus disorder prediction 10 24 - -
Rops11g01803 491 CDD B3_DNA 404 491 IPR003340 GO:0003677
Rops11g01803 491 Coils Coil 487 491 - -
Rops11g01803 491 SUPERFAMILY Nucleic acid-binding proteins 180 232 IPR012340 -
Rops11g01803 491 Pfam B3 DNA binding domain 411 488 IPR003340 GO:0003677
Rops11g01803 491 SUPERFAMILY DNA-binding pseudobarrel domain 286 362 IPR015300 -
Rops11g01803 491 Gene3D - 174 250 IPR012340 -
Rops11g01803 491 Gene3D - 377 491 IPR015300 -
Rops11g01803 491 ProSiteProfiles B3 DNA-binding domain profile. 412 491 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01803 Rops-Chr11 28985193 28996438 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops11g01803 B3 4.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01803 - - gmx:100812435 132.494