Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01793 ATGATGTTTGAGTGCAAGCGTGAATTTGCCTTTGCCAAACATGTTAGCACGGTTAATGAGGAACTCATGGCAGGAGTTACACCAGAGGGGTCACAGTTTGATGCTCGTCAATTTGATAGCAAGATGAATGAGTTGCTTACAGCTGATGGACAGGACTTCTTCACATCATATGATGAGGTTTATGATAGTTTTGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTACGCATATGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAAAGGACTTGATGTTATACAACAGGCTCAGTCTGGAACTGGGAAGACAGCAACTTTCTGCTCAGGCATTTTGCAGCAACTTGACTATAGTGTGACAGAATGCCAAGCCTTGGTTTTAGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGAGCACTCGGAGATTATCTAGGTGTGAAGGTGCACGCTTGTGTGGGAGGTACCAGTGTTCGAGAAGACCAACGCATTCTATCAAGTGGTGTTCATGTTGTTGTTGGAACTCCTGGTCGTGTATTTGATATGCTGCGCAGACAATCACTTCGGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGATCTATGATATATTCCAGCTGCTTCCCACTAAGATTCAAGTTGGAGTGTTCTCTGCTACAATGCCTCCCGAGGCACTTGAGATCACTAGGAAATTTATGAACAAACCTGTGAGGATCCTGGTGAAGCGTGATGAGCTCACCTTGGAGGGTATTAAGCAATTTTATGTCAATGTCGAGAAAGAGGAATGGAAGCTTGACACACTCTGTGATCTTTATGAGACATTGGCAATCACTCAAAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGACTGGTTGACTGACAAGATGCGAAGCCGAGATCACACAGTCTCAGCAACACATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCAGGGTCTTCCCGTGTTTTAATAACTACTGATCTTTTGGCTCGTGGTATTGATGTGCAGCAAGTGTCTTTAGTTATAAATTATGATCTCCCAACACAACCTGAGAACTACCTCCATCGTATTGGTCGTAGTGGGAGGTTTGGTAGGAAAGGTGTTGCCATCAACTTTGTCACAAGGGATGATGAAAGAATGCTGTTTGACATCCAGAAGTTTTACAATGTAGGAAAGTCGGTTTCTGAGGTGTAG 1290 0.438 MMFECKREFAFAKHVSTVNEELMAGVTPEGSQFDARQFDSKMNELLTADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSVTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPTKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVGKSVSEV* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01793 429 CDD DEADc_EIF4A 66 264 - -
Rops11g01793 429 SMART ultradead3 81 278 IPR014001 -
Rops11g01793 429 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724
Rops11g01793 429 FunFam Eukaryotic initiation factor 4A-III 270 428 - -
Rops11g01793 429 Pfam Helicase conserved C-terminal domain 288 396 IPR001650 -
Rops11g01793 429 Gene3D - 52 270 IPR027417 -
Rops11g01793 429 Gene3D - 271 428 IPR027417 -
Rops11g01793 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 416 IPR027417 -
Rops11g01793 429 CDD SF2_C_DEAD 275 405 - -
Rops11g01793 429 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 274 429 IPR001650 -
Rops11g01793 429 PANTHER RNA HELICASE 44 419 - -
Rops11g01793 429 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 263 IPR014001 -
Rops11g01793 429 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 209 217 IPR000629 -
Rops11g01793 429 FunFam Eukaryotic initiation factor 4A-II 50 269 - -
Rops11g01793 429 SMART helicmild6 315 396 IPR001650 -
Rops11g01793 429 Pfam DEAD/DEAH box helicase 87 248 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01793 Rops-Chr11 28823554 28826063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01793 23 413 Eukaryotic Initiation Factors Gene Family AT3G13920 93.112 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01793 K03257 - gmx:100786735 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05179 2 92541755 92544326 Rops11g01793 11 28823554 28826063 PCT