Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01789 ATGACAAGTGCTTTAGACATCACACCACTGAAGCTTCTTTCTGATAACTTAGCCTCAATCTTGGGCTTTGACTTATTCGCCGATGCTAAGATCGTTGCTGCCGATGGCCGAGAAGTCGCCGTGCATCGCTGCATTCTATCGGCGAGGAGTTCTTTCTTCAAGGGCATGTTTGAGGGTTCGTGTGTGGTGCTGCAATTGAAGGAAGTGGCTAAGGATTATGATGTTGGGTTGGAAGCACTTGGGGTTGTTTTGGGTTATTTGTATAGTGGGATGGGAGGGTCAACCCTTTGCCCAAAGCTTCTTTATGCTTCATCTACTTTTCAGATACCTGAGTTGGTTGCTCTTTTTCAGAGACATCTACTAGACATTCTTGACAAGGTGGCAATACATGACATTTTGGTGGTTCTTTCTATTGCAAATATATGTGGTAAAATGTGTGATACATTGCTAGCAAGCTGCACCGAGATAATAGTCAAATCTGATGCTGATATTACCGCTCTTGAAAAAGCACTGCCTGAAGCTATAGTGAAACAAATCATGGAAAAATGTATAGAACTTGGCTTGGACATGCCTGAAATCTTCAATTTTCCAGACAAACATGTCAGAAGAATACAAAGGGCTCTTGATTCAGATGATGTAGAATTAGTACGATTGCTTTTGAAAGTGGGACATACTACTCTAGATGAGGCTTATGCTCTTCACTATGCTGTTGCATACTGTGATGTGAAGACCACTACTGAGCTTCTTGATCTTGGACTAGCTGATGTCAATCACAAAAACCAAAGGGGCTATAGTGTGTTGCATGTTGCTGCAATGAGAAAAGAGCCCAAGATTATAGTTTCTCTCTTAACCAAGGGAGCTCAACCTTCTGAACTTACTTTGGATGGTAGAAAAGCCCTTCAGATTTCAAAGCGTCTCACTAAAGCTGTGGATTATTATAAATCTACAGAGGAAGGAAAGGTGTCATCTAAAGATCGATTGAACATAGAGATATTGGAGCAAGCTGAGAGAAGGGAACCTTTACTTGGGGAGGCATCTCTTTCTCTTGCTATGGCAGGGGATGATCTACGAATGAAATTGTTGTACCTAGAAAATCGAGTTGGACTGGCAAGACTTTTGTTTCCCACAGAAGCAAAGGTTGTGTTGGATATTACTCAACTTGATGGCACATCTGAATTTCCATCAACAGATATCTACTCTCCAAATATGAGCGGTTGCCAGAGGACAACTATGGACTTAAATGAGGCCCCTTTTAAAATAAAGAAGGAGCATCTAATTAGGATGAGAGCACTGTCTAGAAGTGTGGAGTTAGGGAAACGCTTCTTCCCTCGTTGCTCAGAAGTGTTGAATAAGATCATGGATGCTGATGATCTATCTCAGCTTGCATGTATGGATAACGATAGTCCTGAAGAAAGACTAAAAAAGCGAAGAAGGTACATGGAGCTCCAAGAAGTTCTAAACAAGCTCTTCCATGAGGACAAAGAAGAGTTTGATAGGTCTGCCATGTCATCATCATCCTCTTCCACATCATTAGGAGTGGTGAGACCTGAGGGTAAGTTAACCATGAAGAACTAG 1575 0.4178 MTSALDITPLKLLSDNLASILGFDLFADAKIVAADGREVAVHRCILSARSSFFKGMFEGSCVVLQLKEVAKDYDVGLEALGVVLGYLYSGMGGSTLCPKLLYASSTFQIPELVALFQRHLLDILDKVAIHDILVVLSIANICGKMCDTLLASCTEIIVKSDADITALEKALPEAIVKQIMEKCIELGLDMPEIFNFPDKHVRRIQRALDSDDVELVRLLLKVGHTTLDEAYALHYAVAYCDVKTTTELLDLGLADVNHKNQRGYSVLHVAAMRKEPKIIVSLLTKGAQPSELTLDGRKALQISKRLTKAVDYYKSTEEGKVSSKDRLNIEILEQAERREPLLGEASLSLAMAGDDLRMKLLYLENRVGLARLLFPTEAKVVLDITQLDGTSEFPSTDIYSPNMSGCQRTTMDLNEAPFKIKKEHLIRMRALSRSVELGKRFFPRCSEVLNKIMDADDLSQLACMDNDSPEERLKKRRRYMELQEVLNKLFHEDKEEFDRSAMSSSSSSTSLGVVRPEGKLTMKN* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01789 524 MobiDBLite consensus disorder prediction 497 524 - -
Rops11g01789 524 Pfam Domain of unknown function (DUF3420) 165 204 IPR024228 -
Rops11g01789 524 SMART BTB_4 27 124 IPR000210 GO:0005515
Rops11g01789 524 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 173 326 - -
Rops11g01789 524 ProSiteProfiles Ankyrin repeat profile. 262 294 IPR002110 GO:0005515
Rops11g01789 524 Gene3D - 197 311 IPR036770 -
Rops11g01789 524 PANTHER REGULATORY PROTEIN NPR3 3 91 IPR044292 GO:0009862|GO:2000022|GO:2000031
Rops11g01789 524 Pfam BTB/POZ domain 26 120 IPR000210 GO:0005515
Rops11g01789 524 SUPERFAMILY Ankyrin repeat 193 304 IPR036770 -
Rops11g01789 524 Pfam NPR1/NIM1 like defence protein C terminal 304 509 IPR021094 -
Rops11g01789 524 SMART ANK_2a 262 291 IPR002110 GO:0005515
Rops11g01789 524 SMART ANK_2a 228 258 IPR002110 GO:0005515
Rops11g01789 524 SUPERFAMILY POZ domain 12 122 IPR011333 -
Rops11g01789 524 Gene3D Potassium Channel Kv1.1; Chain A 6 159 IPR011333 -
Rops11g01789 524 ProSiteProfiles BTB domain profile. 27 90 IPR000210 GO:0005515
Rops11g01789 524 Pfam Ankyrin repeats (many copies) 232 276 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01789 Rops-Chr11 28720478 28724280 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops11g01789 NPR1_like_C 7.8e-87 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01789 K14508 - gmx:100800032 790.03