Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01783 ATGCACCCCATGGAAGGCATCTTCTCCCTCCCTGCAGCCACTAGAACTGAATTTATCCACTCTCTAGTGCAGTCTTTTGGTTGCTCTTACATTTGCCTGTGGGAACATGACCCCATATCACTCAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTAAGAAACAAACAACCAAGCTCTTCTTTGGGGAGTGTAGCACAACAACTTTTTAACCAGTACAGGTGTTTAACGTTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAATCAGCGTCCCTACCTAGAATTACAACAATTGGAACTTTTGAGATTGGCATCAACAGATATACAAATACAATTCTATCAGGAAGCAAGGATTAAGACTGTTGTTTTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAATATGTCTCAAGCTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGAAGATTTTTCTAGACAGTCCCAGCAAATTGATCAGAATAATCCACCTTCATCATCTTCATCTTCTTTGAGATCATTATCCACAGGTAGCCCTGAATACTCATCCCTGATATTCAATATTCCAGGCACTTCTCAATTTCCTGAGAACCTTGGGGGAGTGCCCCCAATGAGGCCTGTGTCAAACACAGCTGCAAGCCAGCACCAACAACAAGCCATGCAACTCCAAGCATTGGCTCAAGTAACTCCAAGTCAATTCACCACCCCAGAAAGTGAAAATGATGCAATAATGAGAGCAATCCTCAATGTTATATCTTCACCTTCTCATCAGCAGCAAACCCAACAAAACTTGCCTTATATGGTGCATCCAGAAGCTAGTGCTTTCAGCAGGTATAGAGGTGCTAACATCACACCCCAAATAGGGTCCAATTTCAGAAGGCAAAGCTTGATGAAGAGATCATTTGCATTCTTTAGCAACTTAAATTTTATGAGAATGAGAGAACGCATTCAAGCAACCCGTCCCTCTAATACTCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGAGAGAAACTCAATGAGAATTTCCAAGGACTTAGAGCACTACTTCCTCCAGGAACTAAGAAAGACAAAGCTTCTATACTGATAACTGCAAAGGAGACATTGAGTTCTTTGATGGCCGAAATTGACAAACTAAGCAAAAGAAATCAGGAGCTGACATCACTTTTGCCAGCCAAAGAATCAAGAACTGAAGAAACCAAAGCTAGCTTCTCATCAAATGAAAGATTTAATGTCCAAGTTTCACATGTACCGGAATCAAGTTCATCAGAAGAGCGAATGGTGGATTTGCAAGTGAATGTGAGAGGACAAATTGCTCAGGTTGATGTATTAATCCGGTTATTGGAATTTTTAAAACAGGTTCACCATGTGAACTTGATTACCATGGAGGCAAACACCCATGTTGCACAAGGGAATGATGTCCTTCATCAAATAACCTTCAGGCTAAGAATTATTCAGGGAAGTGAATGGGACGAACCTGCCTTCCAGGAAGCAGTGAGAAGAGTAGTTGCTGACTTGGTACAGAACCAAGTGGACCAATAG 1566 0.4157 MHPMEGIFSLPAATRTEFIHSLVQSFGCSYICLWEHDPISLNRLSFLDGFYNVRNKQPSSSLGSVAQQLFNQYRCLTFDVNDDRVPGLAFRNQRPYLELQQLELLRLASTDIQIQFYQEARIKTVVFMGCNKGEIELGFLNMSQADIQTALRSLFPEDFSRQSQQIDQNNPPSSSSSSLRSLSTGSPEYSSLIFNIPGTSQFPENLGGVPPMRPVSNTAASQHQQQAMQLQALAQVTPSQFTTPESENDAIMRAILNVISSPSHQQQTQQNLPYMVHPEASAFSRYRGANITPQIGSNFRRQSLMKRSFAFFSNLNFMRMRERIQATRPSNTQLHHMISERRRREKLNENFQGLRALLPPGTKKDKASILITAKETLSSLMAEIDKLSKRNQELTSLLPAKESRTEETKASFSSNERFNVQVSHVPESSSSEERMVDLQVNVRGQIAQVDVLIRLLEFLKQVHHVNLITMEANTHVAQGNDVLHQITFRLRIIQGSEWDEPAFQEAVRRVVADLVQNQVDQ* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01783 521 Coils Coil 370 397 - -
Rops11g01783 521 CDD bHLH_AtbHLH_like 336 388 IPR045239 -
Rops11g01783 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 396 IPR036638 GO:0046983
Rops11g01783 521 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 513 IPR044658 -
Rops11g01783 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Rops11g01783 521 SMART finulus 337 386 IPR011598 GO:0046983
Rops11g01783 521 Pfam Helix-loop-helix DNA-binding domain 335 380 IPR011598 GO:0046983
Rops11g01783 521 Gene3D - 330 406 IPR036638 GO:0046983
Rops11g01783 521 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01783 Rops-Chr11 28660404 28665212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01783 14 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 42.963 2.38e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g01783 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01783 - - gmx:100807098 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01783 11 28660404 28665212 Rops11g01783 11 28660404 28665212 ECH
Rops2g05188 2 92654067 92658248 Rops11g01783 11 28660404 28665212 PCT