Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01771 ATGATACCAACATACAATTATTCAGTATCTTCTTCTCCTATGCCTTTAGATCTTAATGAAGATCACACTCACCACCTCTTTAACCCAAACCATCATGCTTCTTCTTCATCATCTTCTCTATCATATTCTATACTCTTCAACCCGGATCAAGATCAAGGAGGATCTTACTACTGGGAGGAACCAAAGCACTTACAAAGTGATGAAGAGGCTGAGAAGATTAATCCTTCTAGCGGATCATGGGATCATCCAACAGTTGAAAAGGATGAAAATAGCAGTGACCTCAAGCTGAAGGTTTTGAAGAAAGAAGATGGGAATGAAAATCCTCAAGCTGAGGACAATTCAATGAAGTGGATGCCTTCAAAGAAGAGAATGATGCTGAGAATGATGGTATCGGATCAAACGGGTTCTGATATGGCAGACATCTCAGACCACAAGTATGAAAAACAAAAGCTACAACCATTATCACCTCAAGGAACTGATAATAGTAGCAACAATTATTCAAATCACAGTAATATCACTGTTAGGGTTTGTGCTGATTGCCACACAACTAAGACCCCTCTCTGGAGGGGTGGACCAAGAGGTCCCAAGTCACTGTGCAATGCTTGTGGGATTCGACAAAGGAAAGCAAAACGTGCCCTTGCTGCTGCAGCAGCAGCATCTACAAGTGGCACAATTCTTGTGGCAGCTGATCAGAACAAGTTGCAAAGCAAAGGGAAGAAGAGGTCAAAAACTGAGTGTGCACCCCAGTTGAAAAGGAAGCGTAAATATGGAGGAAGAGAAAGAAAGAAACTTGGTTTTGAAGATTTAACAATAAGTTTGAGTAAGAACTTGGCTCTCCAACAAGTTTCCCCTCGGGATGAGAAAGAGGCTGCAATCTTGCTCATGGCTTTGTCTTATGGATTACTTCATGGCTTTCCCTCTGATCGTTACTTAGATTTATGA 942 0.4151 MIPTYNYSVSSSPMPLDLNEDHTHHLFNPNHHASSSSSSLSYSILFNPDQDQGGSYYWEEPKHLQSDEEAEKINPSSGSWDHPTVEKDENSSDLKLKVLKKEDGNENPQAEDNSMKWMPSKKRMMLRMMVSDQTGSDMADISDHKYEKQKLQPLSPQGTDNSSNNYSNHSNITVRVCADCHTTKTPLWRGGPRGPKSLCNACGIRQRKAKRALAAAAAASTSGTILVAADQNKLQSKGKKRSKTECAPQLKRKRKYGGRERKKLGFEDLTISLSKNLALQQVSPRDEKEAAILLMALSYGLLHGFPSDRYLDL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01771 313 MobiDBLite consensus disorder prediction 63 93 - -
Rops11g01771 313 CDD ZnF_GATA 176 206 IPR000679 GO:0006355|GO:0043565
Rops11g01771 313 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 304 - -
Rops11g01771 313 ProSiteProfiles GATA-type zinc finger domain profile. 175 207 IPR000679 GO:0006355|GO:0043565
Rops11g01771 313 ProSitePatterns GATA-type zinc finger domain. 177 202 IPR000679 GO:0006355|GO:0043565
Rops11g01771 313 SMART GATA_3 171 222 IPR000679 GO:0006355|GO:0043565
Rops11g01771 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 212 - -
Rops11g01771 313 Gene3D - 170 215 IPR013088 GO:0006355|GO:0008270
Rops11g01771 313 MobiDBLite consensus disorder prediction 236 258 - -
Rops11g01771 313 Pfam GATA zinc finger 177 210 IPR000679 GO:0006355|GO:0043565
Rops11g01771 313 MobiDBLite consensus disorder prediction 236 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01771 Rops-Chr11 28379187 28380490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01771 94 304 C2C2-Gata Transcription Factor Family AT4G26150 36.475 1.98e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops11g01771 GATA 2.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01771 - - gmx:100780875 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05203 2 92910162 92911898 Rops11g01771 11 28379187 28380490 PCT