Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01764 ATGGAAGAAGATAAGGTATGCATTCTGGGTCAAAGTCTCGGATTGGGTGAGTCTGCGCCAAAGAAAGAGAACATGCCTGCGGCTTGCTTGGACCTAACGTTTGAGCTTTGTCCAAAAGGAAAAGCCAATGACGATAAGGGGGAAGGATTCAGTTTGAAGAGAGGACAAGAACAAGACCCGCGTCCAAATGAAAAATATGCTGATAATACCAATAACAAGAATAGCAGCAGAAAGAAACTGAAGCTTACAAATGAGCAATCGGTTACGCTTGAGGACTGCTTCAAGCTGCATAAAACCATTAACCCGGCTCAGAAACGGGAACTTGCTGAGCAATTGAATTTAAAGCGCAGACAGGTCGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAACAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGCTGTGAAAACCTAACTGAGGAGAACCTAAGGTTGAAGATGGAATTGCAGCCGCTACGTGCATTAAAAGTTGGACCATCACCACCATGCCCTCAACTCTCAAATGAAGCAAACCTGACCTTGTGTTCATCATGTGAGGAGCTATTAAAGCTCAATGAAGGAAACAATTCTGCCATTTACGATGTGGTGCGAAACAACAACCGCTAA 639 0.4382 MEEDKVCILGQSLGLGESAPKKENMPAACLDLTFELCPKGKANDDKGEGFSLKRGQEQDPRPNEKYADNTNNKNSSRKKLKLTNEQSVTLEDCFKLHKTINPAQKRELAEQLNLKRRQVEVWFQNRRARTKLKQTEVDCEFLKKCCENLTEENLRLKMELQPLRALKVGPSPPCPQLSNEANLTLCSSCEELLKLNEGNNSAIYDVVRNNNR* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01764 212 Pfam Homeobox associated leucine zipper 133 166 IPR003106 GO:0006355|GO:0043565
Rops11g01764 212 CDD homeodomain 77 134 IPR001356 GO:0003677
Rops11g01764 212 Coils Coil 132 152 - -
Rops11g01764 212 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Rops11g01764 212 MobiDBLite consensus disorder prediction 41 81 - -
Rops11g01764 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 27 195 - -
Rops11g01764 212 Pfam Homeodomain 77 131 IPR001356 GO:0003677
Rops11g01764 212 Gene3D - 44 137 - -
Rops11g01764 212 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Rops11g01764 212 SMART halz 133 176 IPR003106 GO:0006355|GO:0043565
Rops11g01764 212 MobiDBLite consensus disorder prediction 41 80 - -
Rops11g01764 212 SMART HOX_1 75 137 IPR001356 GO:0003677
Rops11g01764 212 SUPERFAMILY Homeodomain-like 65 134 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01764 Rops-Chr11 28275767 28276867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01764 75 205 Homeobox Transcription Factor Family AT4G37790 63.359 5.04e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops11g01764 Homeodomain 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01764 K09338 - gmx:100790522 247.669