Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01758 ATGGGTGATACTGATGAGGCATGCATGTTAGGTCTAAGTCTTGAACTGGGATTAGGAGGGTATGTGCCAAAGAAGGAGAAGCAGAAAGTGAACAATTGTTTTGACCTAAATTTTGAGCTTTGTCCAAAAGAGGAAGCCATTCATGATAAGGCAGAAAGATTCAATTTGAAGAGAGGACATCATCCAAATGAAAAGAGTGTTGATGTTATCAATAACAAGAATGGCAGGACAAAGAAACTGAAGCTTACAGAGGAGCAAACAGCCAAGCTTGAGGACAGCTTCAAGCTGCATAAAACCATTAACCCAGCTCAGCGACAGGCACTTGCTGAGCGATTGAATTTGAAGGACAGGCAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAACAAACAGAGGTGGATTGTGAGTTCTTGAAGAAATCGTGTGGAAAACTAGCAGAGGAGAATCTCAGGTTGAAGAAGGAATTGCAGGAGCTGCGTGCATTAAAAGTTGGAGCATCACCATTATACACTCCACTCTCAAAAGCTGCAAACTGGACCTTGTGTTCCTCGTGCAAGGACCTATTGAAGGCTAATGAAGGAAACAATGATGCCATTTCCAATGTGGTCCGAAACAGCAGCCTCAAATTGCAGAGTAGCATAGAGTTATAG 663 0.4284 MGDTDEACMLGLSLELGLGGYVPKKEKQKVNNCFDLNFELCPKEEAIHDKAERFNLKRGHHPNEKSVDVINNKNGRTKKLKLTEEQTAKLEDSFKLHKTINPAQRQALAERLNLKDRQVEVWFQNRRARTKLKQTEVDCEFLKKSCGKLAEENLRLKKELQELRALKVGASPLYTPLSKAANWTLCSSCKDLLKANEGNNDAISNVVRNSSLKLQSSIEL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01758 220 Gene3D - 82 129 - -
Rops11g01758 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 198 - -
Rops11g01758 220 SMART halz 133 176 IPR003106 GO:0006355|GO:0043565
Rops11g01758 220 CDD homeodomain 76 134 IPR001356 GO:0003677
Rops11g01758 220 Coils Coil 125 166 - -
Rops11g01758 220 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Rops11g01758 220 SUPERFAMILY Homeodomain-like 75 142 IPR009057 -
Rops11g01758 220 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Rops11g01758 220 Pfam Homeodomain 77 131 IPR001356 GO:0003677
Rops11g01758 220 SMART HOX_1 75 137 IPR001356 GO:0003677
Rops11g01758 220 Pfam Homeobox associated leucine zipper 133 166 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01758 Rops-Chr11 28182480 28183663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01758 78 192 Homeobox Transcription Factor Family AT4G37790 66.087 3.20e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops11g01758 Homeodomain 5.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01758 K09338 - gmx:100790522 261.536