Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01749 ATGAAGCGGAGCATGGTGGATTTGAAGATATGTGAAGATTTTAATAGTGTTTTGCCTTTTGTTCCTCAGGTCACAAAAGATGTTTCACTTCTATCCAGATGGATGGCAATCCACCTCTATATTCAGGAAGTGGATAGCCTCAGATTTGAGCTATCCATGAACCAGTGCAGTGATAGGTTGTCAAGATTGGCACATGAAATTCTAGAAGATCTTGATTGTCTCCTATCCTCAATGTTTGGGCTATATGGAATGGGGGATGTGATGCTGAGTACAGAATATTCACCTGTGAATAGAAATTCAATACACTTGGTGCAACCAGTTTCAGAGTTGGACAACACACACAATCTTGTATATAAGAAAGAGATATTCCCAAGATTACAAGTAGGAGGCTTGTGGATTGGTGATAGACCTAGCAATACTATGAGGGTTGTTCCAGCACAACCTCAAAAGCCAGTGGAACCCAATAAGGTCACAAGAAAGAAGCCTAAGCCAGGGGAGACAACTCGACCTCGACCAAAAGATCGTCAGCAGATTCAAGACAGCATTCAAGTGTTGAGAGGGATCATCCCCAATTGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCGCACTGTCAGATACATGCTATTCTTAATAAGCATAACTGAGTATGCAGACAAGTTACAAGAACCCCATGAGCCTAAGCTCATTAGGCTGGCAAATGGAGATAGAGATGGCCTAAAAGGTAGTGGTGATGTTACATGGGCATTTGAAGTGGCAGGTCAAACAATGGTATGCCCAATTATAGTTGAGGACATGGGCCCACCTGGCCATATGCTAATAGAGGCTTGCCACTTTTTGGGAATGCCAGAGTGCAATGTGATTCTTGCACAGTGTGTTGCTTACTTGGCCTTAGCTCCTAAATCTATCGCAGTTTATAGAGCAATAGAAGCGGCTCATAAGGTGGTAAAGGCATCAATTGGACAGGATGAGGGAGTGCCTCTTCATCTCAGGAATGCACCAACCAAATTAATGAAGGAAATTGGATATAGGAAGGGATACATATACCCTCTCGACAACCCCTCCTCAACACAGACCTACTTACCCCCCCTCACTTCAAGGGTACAAGTTCCTTGA 1116 0.4328 MKRSMVDLKICEDFNSVLPFVPQVTKDVSLLSRWMAIHLYIQEVDSLRFELSMNQCSDRLSRLAHEILEDLDCLLSSMFGLYGMGDVMLSTEYSPVNRNSIHLVQPVSELDNTHNLVYKKEIFPRLQVGGLWIGDRPSNTMRVVPAQPQKPVEPNKVTRKKPKPGETTRPRPKDRQQIQDSIQVLRGIIPNCGKCSIDSLLDRTVRYMLFLISITEYADKLQEPHEPKLIRLANGDRDGLKGSGDVTWAFEVAGQTMVCPIIVEDMGPPGHMLIEACHFLGMPECNVILAQCVAYLALAPKSIAVYRAIEAAHKVVKASIGQDEGVPLHLRNAPTKLMKEIGYRKGYIYPLDNPSSTQTYLPPLTSRVQVP* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01749 371 SUPERFAMILY post-AAA+ oligomerization domain-like 273 363 IPR008921 GO:0003677|GO:0006260
Rops11g01749 371 Gene3D - 264 302 - -
Rops11g01749 371 Gene3D Phosphoenolpyruvate/pyruvate domain 34 100 - -
Rops11g01749 371 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 97 275 IPR043561 GO:0003700|GO:0006355
Rops11g01749 371 MobiDBLite consensus disorder prediction 140 177 - -
Rops11g01749 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 217 IPR036638 GO:0046983
Rops11g01749 371 MobiDBLite consensus disorder prediction 154 176 - -
Rops11g01749 371 Pfam MgsA AAA+ ATPase C terminal 274 363 IPR021886 -
Rops11g01749 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Rops11g01749 371 Gene3D - 303 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01749 Rops-Chr11 28013798 28024704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01749 95 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 41.714 8.69e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01749 - - pvu:PHAVU_006G000400g 235.343