Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01743 ATGAGTGAGTACTGGTGCAACCCAGATATGTTGTCGTTTAATAACTTGATTGAGCACTTGTGTGATGATAACATGATTGTGGAAGCTAGGGAGGTTTATGGAGACATTGAGATAAAAGAAATGGTTATTTTAGGGCAAAGAAATGGAGGCTTATGGATAGAGAAATGGAGGTTTTTGCATGATACAACCAATTATTTTAGGGAAACGGTGGAATCTGGGCTGAGGCCTAACCTAGTTGTTTACAATAGGTTGGTTGATGACTTGGTTAAAATCAGGAAGATTGACGAGACCAAGTATTTCTTTGATCCAATGGCAAAGAAGCTCATGATGGATGTTGCTAGCTATCAGTTCATGATGAAGGTGTTGAGTGAGGCAGGAAGATTGGATGAAGTGCCTCAAATTGTTCATATCTTGTTGAATGACAATGGGGTTGATTTTATTAGAAAGAAAGAACAGCATAGTGACATCGAGATGACCAAAGAAGAAGTGAAAGCGGTGGTTCCTGAATCCGTTTTGAAGAAGCAGAAAAGGAACGAGGAATGGGCTTTGGCGAAAAAGCAGGAACTTGAAGCCGCTAAGAAGAAGAGGTCCGAAACGCGCAAACTCATTTGCAGCAGAGCCAAACAGTACTCAAAGGAATACGATGAACAGCAAAAGGAACTGATTCGGTTGAAGCGGGAAGCCAAGCTTAAGGGTGGGTTTTATGTTGACCCAGAAGCAAAGCTCTTGTTCATTATCAGGATCAGAGGTATCAATGCTATGCACCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATCTTTAATGGCGTCTTTCTCAAAGTCAACAAAGCAACCATGAATATGCTTCACAGGGTGGAGCCATATGTTACCTATGGGTACCCTAATTTGAAAAGTGTGAGAGAATTGATCTACAAGAGGGGCTACGGAAAAGTTGACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGACTTTGGGAAAGCATGGGATTATTTGCATTGAAGATCTGATCCATGAGATTATGACTGTTGGACCTCACTTCAGGGAGGCCAATAACTTCCTATGGCCTTTTAAGCTCAAAGCTCCCCTGGGCGGTTTGAAGAAGAAAAGAAATCATTATGTGGAAGGTGGTGATGCTGGCAACAGGGAAAATTACATAAATGAGCTTATTAGAAGGATGAATTAG 1206 0.4138 MSEYWCNPDMLSFNNLIEHLCDDNMIVEAREVYGDIEIKEMVILGQRNGGLWIEKWRFLHDTTNYFRETVESGLRPNLVVYNRLVDDLVKIRKIDETKYFFDPMAKKLMMDVASYQFMMKVLSEAGRLDEVPQIVHILLNDNGVDFIRKKEQHSDIEMTKEEVKAVVPESVLKKQKRNEEWALAKKQELEAAKKKRSETRKLICSRAKQYSKEYDEQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDKQRIALTDNSIIEQTLGKHGIICIEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01743 401 Gene3D - 348 401 IPR036919 -
Rops11g01743 401 Gene3D - 242 347 IPR036919 -
Rops11g01743 401 PANTHER 60S RIBOSOMAL PROTEIN L7 165 401 IPR039699 -
Rops11g01743 401 CDD Ribosomal_L7_archeal_euk 242 401 IPR035808 -
Rops11g01743 401 FunFam 60S ribosomal protein L7 347 401 - -
Rops11g01743 401 ProSitePatterns Ribosomal protein L30 signature. 261 293 IPR018038 -
Rops11g01743 401 NCBIfam 60S ribosomal protein uL30 168 401 IPR005998 GO:0000463|GO:0003735|GO:0022625
Rops11g01743 401 SUPERFAMILY Ribosomal protein L30p/L7e 242 401 IPR036919 -
Rops11g01743 401 Gene3D Tetratricopeptide repeat domain 1 219 IPR011990 GO:0005515
Rops11g01743 401 FunFam 60S ribosomal protein L7 242 346 - -
Rops11g01743 401 Pfam Ribosomal L30 N-terminal domain 167 238 IPR012988 -
Rops11g01743 401 Pfam Ribosomal protein L30p/L7e 243 293 IPR016082 -
Rops11g01743 401 Coils Coil 207 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01743 Rops-Chr11 27763729 27767092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01743 158 401 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.836 3.77e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01743 K02937 - gmx:100500011 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01743 11 27763729 27767092 Rops11g01743 11 27763729 27767092 ECH