Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01737 ATGGAGAATATTGGTGAAGAATACAAGCATTACTGGGAAACCAACATGTTCCTCCAAAATCAAGAGATTGACAGCTGGGGATTGGATGAGGCTTTATCAGGGTACTATGATTCAAGCTCCCCAGATGGGGCTGCTTCATCAGCAGCATCTAAGAACATTGTCTCAGAGAGGAATAGGAGGAAGAAACTCAATGAAAGACTCTTTGCTCTTAGATCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCAATTGAGTACATACAACACTTGCATGAGCAAGAGAGGATTATCCAAGCTGAGATAATGGAACTTGAATCTGGGATGCCAAAGAATACTCAAAACTATGCCTTTGAGCAGGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAGCTATATGATTCTGTCACTACAAGAAACTCCCCAATTGAAGTCCTTGAGCTTCGGGTTACATACATGGGAGAGAAGACCATTGTGGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAACTGTGCGAGGTGTTTGAATCTTTGAAGCTGAAGATCATCACAGCTAATATTACTTCGTTTTCAGGAAGGCTTTTAAAGACAGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCTTTTGCAGATAAAGATCCAAACGGCCATTGCAGCTCTTAATGATCCTCTAAGCCCTATGAGCATTTGA 729 0.4143 MENIGEEYKHYWETNMFLQNQEIDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQERIIQAEIMELESGMPKNTQNYAFEQELPVLLRSKKKRTDQLYDSVTTRNSPIEVLELRVTYMGEKTIVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEEKDLLQIKIQTAIAALNDPLSPMSI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01737 242 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Rops11g01737 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Rops11g01737 242 Gene3D - 44 113 IPR036638 GO:0046983
Rops11g01737 242 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 227 - -
Rops11g01737 242 SMART finulus 53 102 IPR011598 GO:0046983
Rops11g01737 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Rops11g01737 242 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01737 Rops-Chr11 27456987 27462333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01737 1 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.138 5.70e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g01737 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01737 - - gmx:100817978 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01737 11 27456987 27462333 Rops11g01737 11 27456987 27462333 ECH
Rops2g05234 2 93487356 93496039 Rops11g01737 11 27456987 27462333 PCT