Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01735 ATGACGGAGCAGATAAAGTTCAGCGTGTTGTGCAGCCTATTCACTTGGACTCAGAGGAGCAAGTCGCCGGCGAAGAAACGCTCCAAGTTCCGCAAGTTCCTTGACTCTTTCTGCAGTGACCGCAACTACTTCCCCGCTATTCGACTCATTCTCCCAAACCTCGATCGTGAACGAGGCTCCTATGGCCTTAAAGAGTCTGTGCTCGCCACTTCCCTCATCGACGCTCTCGGCATGTCGAAGGATTCACCCGACGCTATTCGCCTCGTCAACTGGCGTAAAGGCGGTGCCAAAACCGGTGCCAATGCCGGTAATTTCGCCCTCGTCGCCGCCGAGGTGTTGCAGAGTAGGCAAGGGACAGCTTCCGGTGGATTGACCATAAAGGAGTTGAATGACTTGCTTGATCAGCTGTCTTCAAGTGAAAACAGGGCTGAGAAGACTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCCCAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAGAAGCTAAGGGATCGGAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAGTTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTTGTTGTTGAGTGCAAATTCGATGGTGATCGTATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCGAGGAACTTTCTTGACCATTCTGAATATGCACATGCGATGTCAGAAATCATAATACAAAACATTATTGTAGATAGGTGCATACTTGATGGGGAAATGTTGGTCTGGGACACATCCTTGAATCGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTGATAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGACACTAGTGTAATTCACCAAACTTTGGAGGAACGACATGAGCTTCTCCGTAAAGTTGTGAGGCCAATGAAGGGTCGTTTGGAGATTTTAGTACCGAATGGTGGTATCAACAGTCATCGTTCTTCTGGTGAACCATGTTGGTCATTTATTGCTCATAACGTGGATGAAGTTGAGAGGTTTTTCAAAGAAACCGTTGAAAACAGAGATGAGGGAATTATTGTAAAAGACCTTAGCTCCAAATGGGAACCTAGTGATCGCAGTGGAAAGTGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGCTCTGATCTGGATGTGCTTATCATAGGTGGCTACTATGGCTCTGGACGACGTGGAGGAGAGATTGCTCAATTCTTGGTGGGCCTTGCAGAGCGTCCTTCCCCAAATACACATCCTAAGCGATTTATTTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCTGTAGTAAACAAACTAAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCGCCAAGTTTATATCAAGTTACTAATCATTCAAAAGAAAGACCTGACGTGTGGGTTGACAGCCCTGACAAATCAATTGTCCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACTGCCTGAGATTTCCTCGTATTGACAGGGTGAGATATGACAAGGCTTGGTATGAATGCCTTGACGTGCAATCATTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACCAAATATGGCAGCAAGCAGGACAGTAAACCAAAACGCATGAAATCCTCTATAAGGGGAGAAAAGAAAAACATGTCCATTGTTCCTTCTCATTTAATTCAAACTGATGTTTCCAGTGTTAAGGGGGGTTCCTTAATATTTTCAAATATGATGTTTTTTTCCTTAACATGCACAGACTTTGTTAATGTGCCTCCATCACATTCCCTCGAGTCCATGCACAAAATAATTGCTGAGAATGGGGGAACTTTCTCAATGAATTTGAATAACTCCGTCACCCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAAGCAGCGAAACGTCATGGTGATATCATTCATTATACTTGGGTATTAGATTGCTATGCACAAAGGAAGCTTGTCTACTTACAGCCAAAGTACTTCCTCTTCCTATCTGAACTGACAAAGAAGAAGTTACAAGAAGAAATTGATGAGTTCTCAGACTCTTACTACTTGGATCTTGATCTTGGAGACATCAAACAGCTCTTAAGCAATATTCATAGGTCGGAAGATGTCAGCACTGTTGATCATTACAGGAAAAAATACTGCCCAAAGGATAAATGGTCTTTCTTTAATGGATGCTTCATTTATTTCCACACTGCAATACCATCATTGACAGAAGATTGGAAATTTCTATTGGGACTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTCATGGCTGGTGGAAAAGTTACCTCTAATCTCAATTGTGCAACTCATTTAGTAGCCTTGTTTGAGCCTAGATGTCATACCAACTTCGAAGAAGAAATACAGAATAGTTTTACTTCAGTAGAGAGAAAATTTCTCCGAAGGAAGAGGTTGCATATAGTTAAATCCCAGTGGTTAGAAGATTGTTTGAACAATAGCCAAAGATTACCAGAAGACACTTATAGCTTGAAGCCCATTGGAATAGAAGAGTCAACTGCTGAAGATTGTGAACATGACTTGGCGTTAGAGACCCATCTGGTTGGAGATAATGTAGAAGACCAAAATATGTCTTTATCTGACAAGGTAAATACACAGAGAAGTGCAGAAGTTGCTCGTGAAGACAGCAAGGTTTTGATGTCCCAAGAGAAGGGTGGCGAAAGGAAAAGAGGAAGACCTGCAGGCAGAGGAATCAAAAAAGTAAAAACAGCTGGCAACCAAGCCCGAAGAGCACGAACACAAATTATGAAAAAGCGAGCAAAAATAAGTGAATATGAATCAGATGAAAGTGATTCTCATGACAAAAGACCATGTGAGCAAGAGACTGACACTAAAGAAGAAAGTCTTGAATTTTACAAGAAACATTCAGAACCACAGGAAACCGAGAAACGTGAAAATGTCCAATTCACTGACACAGTAGAAAGTTCTGAACAAAACAAAGCAATCAAGCAAGAGGATTTGAGGGATAGCAAAAGTGAAACAATGTTGGTTCCGGAAATTGAAATGACTGATAAACACAATGACCAAAACAGTCAGGTGACTGAGAAACTTGAAATTTTGGCTGATCCTGTGCAGGCGATGTTATTTGACATGATTCCTAGCCTTGCCATGAAGAAAGTTGAGCAGCCTATGAATCGCGATGTTGGAGAAGAGAAGCAACCAGAAACCTCCAATGTAGAACCTTCAACTGCAAAGAAAAAGAAAGTTAGCTACAAGGATGTTGCTGGGGAGCTTCTCAAGGATTGGTAG 3525 0.4156 MTEQIKFSVLCSLFTWTQRSKSPAKKRSKFRKFLDSFCSDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMSKDSPDAIRLVNWRKGGAKTGANAGNFALVAAEVLQSRQGTASGGLTIKELNDLLDQLSSSENRAEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIIQNIIVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLEERHELLRKVVRPMKGRLEILVPNGGINSHRSSGEPCWSFIAHNVDEVERFFKETVENRDEGIIVKDLSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEIAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDAVVNKLKPYFRKYEYPKKRPPSLYQVTNHSKERPDVWVDSPDKSIVLSITSDIRTIESEVFAAPYCLRFPRIDRVRYDKAWYECLDVQSFIELVHSSNGTTQRDTKYGSKQDSKPKRMKSSIRGEKKNMSIVPSHLIQTDVSSVKGGSLIFSNMMFFSLTCTDFVNVPPSHSLESMHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYTWVLDCYAQRKLVYLQPKYFLFLSELTKKKLQEEIDEFSDSYYLDLDLGDIKQLLSNIHRSEDVSTVDHYRKKYCPKDKWSFFNGCFIYFHTAIPSLTEDWKFLLGLALRRFKLEVLMAGGKVTSNLNCATHLVALFEPRCHTNFEEEIQNSFTSVERKFLRRKRLHIVKSQWLEDCLNNSQRLPEDTYSLKPIGIEESTAEDCEHDLALETHLVGDNVEDQNMSLSDKVNTQRSAEVAREDSKVLMSQEKGGERKRGRPAGRGIKKVKTAGNQARRARTQIMKKRAKISEYESDESDSHDKRPCEQETDTKEESLEFYKKHSEPQETEKRENVQFTDTVESSEQNKAIKQEDLRDSKSETMLVPEIEMTDKHNDQNSQVTEKLEILADPVQAMLFDMIPSLAMKKVEQPMNRDVGEEKQPETSNVEPSTAKKKKVSYKDVAGELLKDW* 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01735 1174 ProSiteProfiles BRCT domain profile. 845 916 IPR001357 -
Rops11g01735 1174 Gene3D BRCT domain 803 916 IPR036420 -
Rops11g01735 1174 MobiDBLite consensus disorder prediction 612 628 - -
Rops11g01735 1174 MobiDBLite consensus disorder prediction 949 1085 - -
Rops11g01735 1174 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Rops11g01735 1174 SUPERFAMILY BRCT domain 797 918 IPR036420 -
Rops11g01735 1174 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Rops11g01735 1174 Gene3D - 444 605 IPR012340 -
Rops11g01735 1174 FunFam DNA ligase 672 786 - -
Rops11g01735 1174 MobiDBLite consensus disorder prediction 1070 1085 - -
Rops11g01735 1174 MobiDBLite consensus disorder prediction 959 984 - -
Rops11g01735 1174 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Rops11g01735 1174 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Rops11g01735 1174 CDD OBF_DNA_ligase_IV 448 592 - -
Rops11g01735 1174 NCBIfam ATP-dependent DNA ligase 61 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Rops11g01735 1174 Gene3D BRCT domain 671 785 IPR036420 -
Rops11g01735 1174 Coils Coil 1065 1085 - -
Rops11g01735 1174 PANTHER DNA LIGASE 4 2 1167 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Rops11g01735 1174 SUPERFAMILY BRCT domain 655 746 IPR036420 -
Rops11g01735 1174 FunFam DNA ligase 1 218 - -
Rops11g01735 1174 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Rops11g01735 1174 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Rops11g01735 1174 MobiDBLite consensus disorder prediction 1134 1162 - -
Rops11g01735 1174 FunFam DNA ligase 220 443 - -
Rops11g01735 1174 MobiDBLite consensus disorder prediction 1009 1062 - -
Rops11g01735 1174 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Rops11g01735 1174 MobiDBLite consensus disorder prediction 604 628 - -
Rops11g01735 1174 Pfam BRCT domain, a BRCA1 C-terminus domain 653 742 IPR001357 -
Rops11g01735 1174 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Rops11g01735 1174 SMART BRCT_7 820 906 IPR001357 -
Rops11g01735 1174 SMART BRCT_7 653 735 IPR001357 -
Rops11g01735 1174 Coils Coil 1000 1020 - -
Rops11g01735 1174 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Rops11g01735 1174 ProSiteProfiles BRCT domain profile. 651 745 IPR001357 -
Rops11g01735 1174 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Rops11g01735 1174 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Rops11g01735 1174 Coils Coil 126 146 - -
Rops11g01735 1174 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Rops11g01735 1174 FunFam DNA ligase 444 605 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01735 214 601 Core DNA Replication Machinery Family AT1G08130 27.723 4.21e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01735 K10777 - gmx:100816002 1979.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01735 11 27402677 27436277 Rops11g01735 11 27402677 27436277 ECH