Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01731 ATGTTAAGGAGGACAGTTGCTGATTCTTCCATCAAGGATTCTTCAAATAAAAAAATTATTATTGGACAAAATCTACATAAAACTGATGGCAAATCTTCACAGATGCTGTCATCAACAAAGCTACTGGGAGGAAAATTTTCTCTTGGTTCTAGAATAGAGGGGAAAGATGTTGATGGGGAGGCAACGGTTCATAAACATAAGAGAAGGAGAAAGAAGAAAAGACAAAGGGATAATGTGGATCTTGAAGATGTTTCACGCCTGCTGAGAAGAACAAGGTACCTCTTGATCAAAATAAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGATGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGCCATTCGCCAACTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAATTGCAAGTTGCGTGAAGCTTTCCCAGATAATGATATTATCCTTTGTGATGGCACGTGTAATCGTGCCTTTCACCAAAGATGTCTTGATCCTCCCTTGGATACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGTTCTGTGAATGTAAGATAGAAATACTGGAGGCAACAAATGCCCATCTTGGGACACAATTATCCTTGGACTGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATACCTGATGGTGATACTACATTACTGAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTATAATCCAGAGAGGAAAGAAGACAACCACAGCATCAACACAGAAGGAGTTGATGATAATGTATCTGATGACTTAAGCAGCTCTTCCAGTCTGTGGTCTTTGAATGGTGAATGTTCTCCAGTAGATGAAGGCATCAGCCTTGAATATTATTCTGTTAATAGTTGCATAGATTCCGATGAGTCAGGGGAAATAGCCTGTGGCCGCAGGCAGCGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTCCATGTGAACAAGTAAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGCTAATACCCTTATGACTCTGCATGAAAGTGAGAATAAATATCCCAATAATGAGAACAATGATAGAATAAGAGAGGGTTCTACAGGCATACGAATAAAAAGGCATTGTTTCAGAATTCCACATGATGCACTTGAGAAACTTCGGCAAGTTTTTGCAGAAAATGAGCTTCCTCCAAGATCCGTGAGGGAAGGTCTTTCAAAAGAGTTGGGAATTGATGCTGTGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAACCAGAAAGTATCAAGCAGAAGGAGGACAACAGCTTCAGATTTTCACTTCTAAGCCTTCAAAAGATTCTAGATCACGAGATGTGGAGAAAGATGAGCTTTTGAAACCAAAGGCCTCAAAAATTACTGTGATTCATTCCCAGAAGAGTGGTAAAAATGTCAGTGGCAAAGAGAAAATGAAGTCATCTAGCAGTCCTTTGAAGGAAAGGCAACCAGAAGTATCTCCACCCTTGAGAGAAAACGGCAACAAGGACTACAAGGAGGTCAGTGATGATGTTAGCTTGAAGAAACTGTTCAAAGAAAGGAAAAGGAGGGTAGCTTGTATATTTGAAGGAGACTCTCAAGCAGCAGAGTTGGAGTTTGAAAAACTCAGCAAAGTAAAGATTAAACTAGATAGTATGAAGCAAAAATTAACTCAAGTTCAAAATTACAGAGTGAAGGAAAAGGTTGAGCCACCTATTATTTATGTACCAACAGCTGAATTGAGGGAAAAGGTTGAATAA 1959 0.3966 MLRRTVADSSIKDSSNKKIIIGQNLHKTDGKSSQMLSSTKLLGGKFSLGSRIEGKDVDGEATVHKHKRRRKKKRQRDNVDLEDVSRLLRRTRYLLIKIKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQLSLDCTWQDVFKEEAAIPDGDTTLLNPEEEWPSDDPEDDDYNPERKEDNHSINTEGVDDNVSDDLSSSSSLWSLNGECSPVDEGISLEYYSVNSCIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAANTLMTLHESENKYPNNENNDRIREGSTGIRIKRHCFRIPHDALEKLRQVFAENELPPRSVREGLSKELGIDAVKVSKWFKNARYLALKTRKYQAEGGQQLQIFTSKPSKDSRSRDVEKDELLKPKASKITVIHSQKSGKNVSGKEKMKSSSSPLKERQPEVSPPLRENGNKDYKEVSDDVSLKKLFKERKRRVACIFEGDSQAAELEFEKLSKVKIKLDSMKQKLTQVQNYRVKEKVEPPIIYVPTAELREKVE* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01731 652 ProSitePatterns Zinc finger PHD-type signature. 175 226 IPR019786 -
Rops11g01731 652 SUPERFAMILY FYVE/PHD zinc finger 166 231 IPR011011 -
Rops11g01731 652 SUPERFAMILY Homeodomain-like 426 487 IPR009057 -
Rops11g01731 652 CDD PHD_PRHA_like 174 226 IPR045876 -
Rops11g01731 652 FunFam pathogenesis-related homeodomain protein 429 493 - -
Rops11g01731 652 SMART PHD_3 174 227 IPR001965 -
Rops11g01731 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 223 IPR013083 -
Rops11g01731 652 Pfam Homeodomain 437 482 IPR001356 GO:0003677
Rops11g01731 652 ProSiteProfiles 'Homeobox' domain profile. 427 487 IPR001356 GO:0003677
Rops11g01731 652 SMART HOX_1 429 491 IPR001356 GO:0003677
Rops11g01731 652 CDD homeodomain 428 482 IPR001356 GO:0003677
Rops11g01731 652 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 22 650 - -
Rops11g01731 652 FunFam pathogenesis-related homeodomain protein-like 166 226 - -
Rops11g01731 652 ProSiteProfiles Zinc finger PHD-type profile. 172 229 IPR019787 -
Rops11g01731 652 MobiDBLite consensus disorder prediction 371 398 - -
Rops11g01731 652 MobiDBLite consensus disorder prediction 537 551 - -
Rops11g01731 652 MobiDBLite consensus disorder prediction 260 309 - -
Rops11g01731 652 Gene3D - 427 491 - -
Rops11g01731 652 MobiDBLite consensus disorder prediction 60 79 - -
Rops11g01731 652 MobiDBLite consensus disorder prediction 525 573 - -
Rops11g01731 652 MobiDBLite consensus disorder prediction 271 285 - -
Rops11g01731 652 Pfam PHD-finger 174 229 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01731 Rops-Chr11 27319380 27327613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01731 74 492 Homeobox Transcription Factor Family AT4G29940 56.813 2.15e-154 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Rops11g01731 Homeodomain 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01731 - - gmx:100816912 1015.76