Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01699 ATGGAGTGGGATAGCAATTCCGATCTCAGCGGTGATGAAGACGACGTCGCTTCATCGTTCCTCCTAAACGACGACGTTGGACCCCTTCCTTTCCCTGTCCTCCAAACGGCACCGTGTGGCTTCGTCGTTACCGACGCGCTTGAACATGACCACCCTATCATATACGTCAACGCCGTTTTCGAGATGCTTACTGGTTACCGTGCCGAAGAAGTTCTCGGTCGCAACTGCCGCTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTTGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTGAGGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTCACGCCTATATATGGAGATGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATCGATCTTGGTCCGGTCCCGGGTTCTACATTTAAGGAATCTGCTAAATCATCAGATTGGTTTCATTCTGTGCTTTCCTCGTTGCATCCTCTTCCAGTGGGGGACCGGAATGTGACTCGTGGAGTTTGTGGGATATTGCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAAGTCCAAGAGATATTGCATCGGTTGGTTCTGTCTCTAGGCGATTGTATGAGGTAACAAAAAATGAAGACCTTTGGAGAATGGTTTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACCGTGCCTGGTGCAAGGAGACTTGGTTGGGGTCGGCTGGCGAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTTCTGTTGAGCCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTCGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGCTCTCCTCCTCCTGGTCGGTGGGGCCACACACTATCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGGGGCTGTGGAAGACAGGGCTTGCTCAATGATGTTTTTGTTTTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCCCCTCTTCCAAGATCATGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTGCTTTTGAGTGATACTTTCCTCCTTGATATGTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCTCGTCTGGGTCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGTCCCCTGCGTTTTCGCTCCAGTGATGTATTCACAATGGATTTAAGTGAGGAGGAACCATGCTGGAGATGTGTAACAGGGAGTGGAATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCACGTGGCTGTTAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTCGATCCAACCGATGAGAAACCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGCGTTGTTGGAGGGACAAGAGCTCTTGTACTGGGTGGTCAAACTGGGGAGGAATGGATGTTAAGTGAGCTCCATGAACTTTCCCTGGCAAGTTCAGTCATCTAG 1836 0.4826 MEWDSNSDLSGDEDDVASSFLLNDDVGPLPFPVLQTAPCGFVVTDALEHDHPIIYVNAVFEMLTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDDEITHVIGIQFFTEANIDLGPVPGSTFKESAKSSDWFHSVLSSLHPLPVGDRNVTRGVCGILQLSDEVLSLKILARLSPRDIASVGSVSRRLYEVTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGSVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRALVLGGQTGEEWMLSELHELSLASSVI* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01699 611 Pfam PAS domain 38 148 IPR000014 -
Rops11g01699 611 FunFam Putative LOV domain-containing protein 477 610 - -
Rops11g01699 611 Pfam Galactose oxidase, central domain 295 345 - -
Rops11g01699 611 Gene3D PAS domain 31 159 - -
Rops11g01699 611 ProSiteProfiles PAS repeat profile. 33 108 IPR000014 -
Rops11g01699 611 FunFam Putative LOV domain-containing protein 272 476 - -
Rops11g01699 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 37 148 IPR035965 -
Rops11g01699 611 Gene3D - 498 610 IPR015915 GO:0005515
Rops11g01699 611 NCBIfam PAS domain S-box protein 49 147 IPR000014 -
Rops11g01699 611 FunFam Adagio protein 1 196 243 - -
Rops11g01699 611 CDD F-box_AtADO-like 198 244 - -
Rops11g01699 611 SUPERFAMILY Galactose oxidase, central domain 281 596 IPR011043 -
Rops11g01699 611 Pfam F-box-like 207 245 IPR001810 GO:0005515
Rops11g01699 611 Gene3D - 194 243 - -
Rops11g01699 611 SUPERFAMILY F-box domain 190 260 IPR036047 GO:0005515
Rops11g01699 611 CDD PAS 37 147 IPR000014 -
Rops11g01699 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 29 608 - -
Rops11g01699 611 FunFam Adagio protein 1 31 159 - -
Rops11g01699 611 Gene3D - 273 497 IPR015915 GO:0005515
Rops11g01699 611 Pfam Galactose oxidase, central domain 357 406 - -
Rops11g01699 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Rops11g01699 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01699 Rops-Chr11 26511026 26519790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01699 33 149 AGC Kinase Gene Family AT5G58140 34.188 1.26e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01699 K12115 - gmx:100802828 1151.73