Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01687 ATGAAGAGAAGCAACTTTGAAGTGTTGGGAATGTGCTGTGCCTCAGAAGCAGCAATGGTTGAAAGAATTCTGAAGCCCTTTCATGGTGTCAAAGATGTCTCAGTGATAGTCCCTACCCGAACAGTTATCGTGGTCCATGATGTTCTCCTAATTTCTGAGTCACAAATAGCTGATGCACTGAACACGGCAAGGCTTGAAGCTAGTTTTAGACCACAGGGAGAGACCAAGGATGAAAAGAAATTGCCAGATTTACTTACAATGGCCTCTGGCTTGTTACTAGCACTTTCTTTCTTGAAGTATGTATATCCCCCTTTGAGATGGTTGGCTCTTGGTTCTGTTGTTATTGGCTTCCCTAAAGTTCTATTCAGGGCCATAGCTTCCATCAGGACTCTTTCTCTTAATATCAACATTCTGGTTCTATTGGCGGTGTGTGGTACTGCTGCTTTACAAGATTTCACAGATGGTGGAGTCATCATCTTCCTGTTCTCCATTGCTCAATGGCTAGAGACAAAAGCAACTCACAAGGCAATGGTGGCAATGTCCTCTTTATCAAGCATGGTTCCTCAAAAGGCCGTTGTTGCTGAAACCGGGGAACGTGTTGATGTCAATGAAATTAAGATCAACACCATCATTGCGGTCAAGGCTGGTGATGCTATTCCTCTTGATGGAATCGTGGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGGGAATCATTCCCTGTCACCAAAGAGTTAGATTCAATAGTCTGGGCTGGAACTATTAATCTGAATGGATATATAAGTGTAAAAACTACCGTGGTAGCACAAGACACAGCAGTGGCAAGAATGTCAAAACTTGTTGAAGAGGCTTCTAGTAGAAAATCTCGAACACAAAGATTCGTAGATAAGTTTGCAAAGTACTTCATTCCTGTGGTTGTGTTGATTTCAGCCAGCATTGCTGTGGTTCCTGCCGCATTAGGAGTTCCTGATATTGAGCCTTGGTTTCATCTGGCAATTGTGGTTTTATTGAGTGGATGCCCTTGTGCTCTCATCCTCTCCACACCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAGTAAGTGGATTACTACTGAAAGGTGGAGATTATCTTGAAACACTTTCTGGAATTAAGACCGTGGCTTTTGATAAAACGGGCACCATAACAAGGGGAGAGTTCACTGTAACAGATTTTTGTGCTGTAGATGACATTAGCATTGAAACCTTATTGTACTGGGTTTCTAGTATTGAGAGTAAATCAAGTCATCCAATGGCTGCTGCACTAGTGGAATATGGAGTGTTGCACTCTATCAAACCAATAACTGAAAATGTGGAGAATTTTCAAAATTTTCCAGGTGAAGGAATTTTAGGTACCATTGATGGGAGGGATATCTATATAGGCAATAGGAGAATTGGTGTCAGAGCTGGCTATGAAAGAGTCGATTGCCACGTGCAAGTTGAAAGCCAAGAGATTTCTTCCCATAAACAATGTTGTAGACCAACTCTAGTTGGAGTTTTCAGCCTAGCTGATACTTGCAGATCAGGTGCTTTGGAGGCAATAGAAGAACTAAAGTTATTAGGCGTGAGATCTGTCATGCTAACAGGAGATAGCACTCAGGTTGCTAAGTATGTTCAGAGTCAGTTGAACCATGCTCTAGACATTATTCATGCTGAGCTTCTACCTCATGAAAAGGCAATAATTATTGAGAATTTGAAGAAAGATGGGCTAACAGCAATGATTGGAGATGGCATTAATGACGCTCCTGCATTAGCTACAGCTGACATTGGCATCTCAATGGGAATATCTGGCTCAGCTCTTGCAAATGAGACAGGCAATGCAATTCTCCTGTCAAATGACATCCGAAAAATACCTGAAGCCATTAGGCTAGCAAGAAAAACTACCAGAAAACTCATTGAGAATGTCATTATTTCAATTGGCTCCAAGAGTGTCATACTGGCATTGGCAATTGCAGGATATCCATTAGTTTGGCTTGCTGTGTTAACTGATGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTACAAGAGAAACCCAAATATGAAAGAGAATCTACAAGGTCTAAATATGGAAGCTTCTTGGAAGATAAGACCAAAACTCTACTTGACAAGCAAAGTAATAATGATGATAGCCAAGGGCTTCTTACTGCAGAAAAGTGTGGTAAAGAGTGTTGTAAAAATGTCACTCATCATGTCACAACTACCAAAGCAACCAAACATGAATCCTGTGGAGTTTCAAAGTTGAGCTTACTCAAGGGAAATGACTATGGGAACTTCATCTTTGTTGAAGTTTATATGGTGAAACCTTGCAATGGTTACTGTTCAGACAAAGTCAAATTGTGTGAGGACTCCTCATGCAGAACAAAGAATGGCTCTGATTGTAGCACTGGATCTGTTGTGACACAAGATGCCACCAGCATTGCTACCTTGGAGTCTGCTAGCTACAAGGACAAATCAATGGCTATTTCAGAGTTGTCTGGGACAAGTGGGATTCCCCAGTGCTGCAAGAATGGATGTTGTAATGATCGTGTTAATGATATCAGTAGCCTTAGCCAGCCAGAAATTATTATTGAGTGA 2613 0.4126 MKRSNFEVLGMCCASEAAMVERILKPFHGVKDVSVIVPTRTVIVVHDVLLISESQIADALNTARLEASFRPQGETKDEKKLPDLLTMASGLLLALSFLKYVYPPLRWLALGSVVIGFPKVLFRAIASIRTLSLNINILVLLAVCGTAALQDFTDGGVIIFLFSIAQWLETKATHKAMVAMSSLSSMVPQKAVVAETGERVDVNEIKINTIIAVKAGDAIPLDGIVVEGKCEVDEKMLTGESFPVTKELDSIVWAGTINLNGYISVKTTVVAQDTAVARMSKLVEEASSRKSRTQRFVDKFAKYFIPVVVLISASIAVVPAALGVPDIEPWFHLAIVVLLSGCPCALILSTPVAIFCALTKAAVSGLLLKGGDYLETLSGIKTVAFDKTGTITRGEFTVTDFCAVDDISIETLLYWVSSIESKSSHPMAAALVEYGVLHSIKPITENVENFQNFPGEGILGTIDGRDIYIGNRRIGVRAGYERVDCHVQVESQEISSHKQCCRPTLVGVFSLADTCRSGALEAIEELKLLGVRSVMLTGDSTQVAKYVQSQLNHALDIIHAELLPHEKAIIIENLKKDGLTAMIGDGINDAPALATADIGISMGISGSALANETGNAILLSNDIRKIPEAIRLARKTTRKLIENVIISIGSKSVILALAIAGYPLVWLAVLTDVGTCLLVILNSMLILQEKPKYERESTRSKYGSFLEDKTKTLLDKQSNNDDSQGLLTAEKCGKECCKNVTHHVTTTKATKHESCGVSKLSLLKGNDYGNFIFVEVYMVKPCNGYCSDKVKLCEDSSCRTKNGSDCSTGSVVTQDATSIATLESASYKDKSMAISELSGTSGIPQCCKNGCCNDRVNDISSLSQPEIIIE* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01687 870 ProSitePatterns Hypothetical cof family signature 2. 583 605 - -
Rops11g01687 870 FunFam Putative cadmium/zinc-transporting ATPase 3 1 71 - -
Rops11g01687 870 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 2 690 - -
Rops11g01687 870 Gene3D - 395 515 IPR023299 GO:0000166
Rops11g01687 870 NCBIfam heavy metal translocating P-type ATPase 135 685 IPR027256 GO:0006812|GO:0016020|GO:0019829
Rops11g01687 870 ProSiteProfiles Heavy-metal-associated domain profile. 2 68 IPR006121 GO:0046872
Rops11g01687 870 Gene3D - 375 634 IPR023214 -
Rops11g01687 870 FunFam Putative cadmium/zinc-transporting ATPase 3 395 515 - -
Rops11g01687 870 SUPERFAMILY HAD-like 382 684 IPR036412 -
Rops11g01687 870 NCBIfam HAD-IC family P-type ATPase 157 664 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops11g01687 870 CDD P-type_ATPase_HM 86 685 - -
Rops11g01687 870 Gene3D - 1 70 - -
Rops11g01687 870 PRINTS P-type cation-transporting ATPase superfamily signature 607 619 - -
Rops11g01687 870 PRINTS P-type cation-transporting ATPase superfamily signature 384 398 - -
Rops11g01687 870 PRINTS P-type cation-transporting ATPase superfamily signature 233 247 - -
Rops11g01687 870 PRINTS P-type cation-transporting ATPase superfamily signature 529 539 - -
Rops11g01687 870 PRINTS P-type cation-transporting ATPase superfamily signature 507 518 - -
Rops11g01687 870 PRINTS P-type cation-transporting ATPase superfamily signature 583 602 - -
Rops11g01687 870 SFLD p-type atpase 367 636 IPR044492 -
Rops11g01687 870 NCBIfam cadmium family heavy metal-translocating P-type ATPase 135 687 - -
Rops11g01687 870 SUPERFAMILY HMA, heavy metal-associated domain 3 73 IPR036163 GO:0046872
Rops11g01687 870 Gene3D - 173 287 - -
Rops11g01687 870 SFLD Haloacid Dehalogenase 367 636 - -
Rops11g01687 870 Pfam haloacid dehalogenase-like hydrolase 380 597 - -
Rops11g01687 870 SUPERFAMILY Calcium ATPase, transmembrane domain M 135 378 IPR023298 -
Rops11g01687 870 FunFam Copper-transporting ATPase 1, putative 173 287 - -
Rops11g01687 870 Pfam E1-E2 ATPase 187 362 - -
Rops11g01687 870 SUPERFAMILY Calcium ATPase, transduction domain A 198 283 IPR008250 -
Rops11g01687 870 ProSitePatterns E1-E2 ATPases phosphorylation site. 386 392 IPR018303 -
Rops11g01687 870 CDD HMA 6 68 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01687 Rops-Chr11 26330927 26336313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01687 1 742 Primary Pumps ATPases AT4G30110 57.086 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01687 K01534 - gmx:100815324 1352.04