Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01686 ATGAAGTATATTCGGAGCAATAGCTTGAAGAGGCTCTTCTCTTTTGGAAGACGAAGTTTTGGGGGAGAAAACGATGAGAGCATTGTGGTTCCTCCAAAACCCTCTTGGAAATGTTTCTCTTTTGAAGAGTTGTTTAATGCCACCAATGGCTTCAGCTCGGGAAATATGGTTGGAAAAGGAGGGTATGCAGAGGTTTACAAGGGAAGATTGAATGGTGGTGAGGAAATTGCTGTGAAGAGGCTCACGAGAACTTCAAGGGATGAGAGAAAGGAGATGGAGTTTCTCACGGAGATTGGTACAATTGGTCATGTGAACCATTCCAATGTGTTGCCTCTTCTTGGGTGTTGTATTGACAATGGACTTTACCTTGTTTTTGAGCTATCTACTGTAGGCGCTGTTGCTTCTCTTATTCATGATGAGAAAAGGCCTCCTCTTAATTGGAAAATAAGGTTCAAGATAGCTCTTGGAACAGCACGTGGCCTTCACTACTTGCACAAAGGATGTCAGAGGAGGATAATCCATAGGGACATCAAGGCCTCAAACATTCTGTTGACAGAAGATTTTGAACCACAGATATCCGATTTTGGACTAGCAAAGTGGCTTCCATCTCAGTGGACTCATCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTAGCACCTGAGTACTATTTGCATGGAGTTGTGGATGAGAAAACAGATGTATTTGCCTTTGGAGTGTTCTTGCTTGAAGTCATCTCTGGGAGAAAACCAGTGGATGGGTCTTACCAAAGCTTGCACAGCTGGGCCAGACCAATATTGAACAAAGGGGAGATAGAAAAGTTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGACTTGCCTTTGCTGCCTCGCTGTGCATACGGGTATCTTCAACTTGGCGACCTACCATGAGTGAGGTATTAGAGGTGATGGAGGAGGGGGAGATGGATAAAGAGAAGTGGACAATACCAGAGGAAGAGCAAGAAGAGGAGGAATTCTGGGGTTTTGAGGATCTGGCATGTGTATATGACAGTTCCTTTTCAATGTCTCTACCTGACTCCATTGGAAGTACTTAG 1098 0.4417 MKYIRSNSLKRLFSFGRRSFGGENDESIVVPPKPSWKCFSFEELFNATNGFSSGNMVGKGGYAEVYKGRLNGGEEIAVKRLTRTSRDERKEMEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSTVGAVASLIHDEKRPPLNWKIRFKIALGTARGLHYLHKGCQRRIIHRDIKASNILLTEDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSYQSLHSWARPILNKGEIEKLVDPRLGGAYDVTQFNRLAFAASLCIRVSSTWRPTMSEVLEVMEEGEMDKEKWTIPEEEQEEEEFWGFEDLACVYDSSFSMSLPDSIGST* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01686 365 Gene3D Phosphorylase Kinase; domain 1 23 127 - -
Rops11g01686 365 SUPERFAMILY Protein kinase-like (PK-like) 28 318 IPR011009 -
Rops11g01686 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Rops11g01686 365 ProSiteProfiles Protein kinase domain profile. 51 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01686 365 FunFam Putative receptor-like serine/threonine-protein kinase 129 342 - -
Rops11g01686 365 Gene3D Transferase(Phosphotransferase) domain 1 130 342 - -
Rops11g01686 365 Pfam Protein tyrosine and serine/threonine kinase 54 256 IPR001245 GO:0004672|GO:0006468
Rops11g01686 365 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Rops11g01686 365 FunFam Putative receptor-like serine/threonine-protein kinase 22 127 - -
Rops11g01686 365 PANTHER OS08G0249100 PROTEIN 27 345 IPR046958 -
Rops11g01686 365 SMART serkin_6 51 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01686 Rops-Chr11 26314781 26318343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01686 37 328 Receptor kinase-like Gene Family AT1G60800 44.000 5.35e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops11g01686 PK_Tyr_Ser-Thr 1.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01686 - - gmx:100801765 645.966