Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01655 ATGCCAATGGCAACTACACCAGCACCCGCTGATGGGTCTGGCAAGAAGGTTAGAAAGCCTTACACCATTACCAAGTCAAGAGAGAGCTGGACTGAGGAAGAACACGACAAGTTTCTTGAAGCTCTTCGACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTGAGTCAGATTCGAAGCCATGCTCAAAAACACTTCTTGAAGGTTCAAAAAAATGGGACAGTAGCACATGTGCCTCCTCCTCATCCTAAGCGCAAAGCTGCTCATCCATACCCACAAAAGGCATCCGAAAATGTTTTGGTGCCACTACCAGCATCCATTGCTTATGCCTCTTCGACAAATACCCTTGCACCTGGGTATGCCACATGGGATGAAACTTCCATGCTGATGAATACCGGATCCAGTAAATCCATGACCTGTCAGGATGAACTCAACAATTTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTAGCAACAGTAGTCTCAGTGGTGTTGGGAACTCTAATAGAAGGATACCGACTTCTGAGATACCAAAACAAGGGAAACAAGCTCCGATGCTTCATGGTTCGCCGGACTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTTTTTGATCCAGATACAAATGGCCATGTCCAGAAGCTGAAAGAAATGGACCCTATAAATCTTGAAACTGTTTTGTTGTTAATGCGAAACCTTACCGTCAACTTGTCTAGCCCTGACTTTGGTCCATTAAAAAGGCATTGTCAACATATGATGTCAATGCCATGGCAGTCAAAGACTAAGGTTTTGTTGAGCCAGCAGCAAGACATGGGAGTGTGTTGTGTTGCACTTGCTGTAAAGCCTGAAACGGAGAAGAAGAAGTATCCCATCGGAGCCGAGCATTACCTTCTCTACGAGGAGATTGGACACGGCGTCAGTGCTTCAGTCCACCGCGCTCTCTGTCTCCCCTTCAACGAGGTCGTCGCCATCAAAATCCTCGACTTCGAACGTGACAATCGCGATCTGAATAATGTTTCTCGTGAAGCACAGACGGTGATCCTGGTGGACCACCCTAACGTGCTGAAATCGCACTGCTCCTTCGTGAGCGACCATAATCTGTGGGTGGTGATGCCGTTCATGGCTGGCGGTTCGTGCCTTCGCATATTGAAAGCGGCACACCCTGATGTTTTTGAGGAGGTGGTGATTGCCACCGTGCGAGGAGGTGTTGAAGGGTTTAGAGTACCTTCATCATCATGGCCACATCCACAGAGATGTCAAGGCCGGCAACGTTCTCATCGATTCACGCGGTGTCAGTCAAGCTTGGCGATTTTGGCGTCTCTGCTTGCCTCTTTGATTACGGCGACGGACAACGCTCCAGAACACCTTCGTCGAAACACCTTCTTTGGATGGCACCGAGGTCATGGAGCAAGCTGCATGGTTATAACTTCAAAGTGA 1470 0.4728 MPMATTPAPADGSGKKVRKPYTITKSRESWTEEEHDKFLEALRLFDRDWKKIEDFVGSKTVSQIRSHAQKHFLKVQKNGTVAHVPPPHPKRKAAHPYPQKASENVLVPLPASIAYASSTNTLAPGYATWDETSMLMNTGSSKSMTCQDELNNFHGNEADIGSKGITQISNSSLSGVGNSNRRIPTSEIPKQGKQAPMLHGSPDFAEVYSFIGSVFDPDTNGHVQKLKEMDPINLETVLLLMRNLTVNLSSPDFGPLKRHCQHMMSMPWQSKTKVLLSQQQDMGVCCVALAVKPETEKKKYPIGAEHYLLYEEIGHGVSASVHRALCLPFNEVVAIKILDFERDNRDLNNVSREAQTVILVDHPNVLKSHCSFVSDHNLWVVMPFMAGGSCLRILKAAHPDVFEEVVIATVRGGVEGFRVPSSSWPHPQRCQGRQRSHRFTRCQSSLAILASLLASLITATDNAPEHLRRNTFFGWHRGHGASCMVITSK* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01655 489 ProSiteProfiles Protein kinase domain profile. 307 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01655 489 ProSiteProfiles SANT domain profile. 25 76 IPR017884 -
Rops11g01655 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 76 IPR017930 -
Rops11g01655 489 ProSitePatterns Protein kinases ATP-binding region signature. 313 336 IPR017441 GO:0005524
Rops11g01655 489 FunFam protein REVEILLE 6 isoform X1 29 77 - -
Rops11g01655 489 SMART sant 26 74 IPR001005 -
Rops11g01655 489 PANTHER SWI/SNF COMPLEX-RELATED 14 249 - -
Rops11g01655 489 FunFam Serine/threonine-protein kinase BLUS1 296 384 - -
Rops11g01655 489 MobiDBLite consensus disorder prediction 1 28 - -
Rops11g01655 489 CDD SANT 29 72 IPR001005 -
Rops11g01655 489 ProSiteProfiles Myb-like domain profile. 22 72 IPR001005 -
Rops11g01655 489 SUPERFAMILY Protein kinase-like (PK-like) 296 405 IPR011009 -
Rops11g01655 489 Gene3D - 30 77 - -
Rops11g01655 489 SUPERFAMILY Homeodomain-like 21 77 IPR009057 -
Rops11g01655 489 Gene3D Phosphorylase Kinase; domain 1 295 384 - -
Rops11g01655 489 NCBIfam myb-like DNA-binding domain, SHAQKYF class 25 74 IPR006447 GO:0003677
Rops11g01655 489 SMART serkin_6 307 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01655 489 Pfam Myb-like DNA-binding domain 27 71 IPR001005 -
Rops11g01655 489 Pfam Protein kinase domain 310 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01655 Rops-Chr11 25358923 25360574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01655 296 417 MAP Kinase Kinase Kinase Kinase AT1G79640 78.862 4.69e-62 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Rops11g01655 Pkinase 4.5e-10 CL0016
TF MYB-related Rops11g01655 Pkinase 4.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01655 - - gsj:114372630 437.958