Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01654 ATGCCAATGGCAACTACACCATCACCAGCTGATGGGTCTGGCAAGAAGGTTAGAAAGCCTTACACCATTACCAAGTCAAGAGAGAGCTGGACTGAGGAAGAACACGACAAGTTTCTTGAAGCTCTTCGACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTGAGTCAGATTCGAAGCCATGCTCAAAAACACTTCTTGAAGGTTCAAAAAAATGGGACAGTAGCACATGTGCCTCCTCCTCATCCTAAGCGCAAAGCTGCTCATCCATACCCACAAAAGGCATCCGAAAATGTTTTGGTGCCACTACCAGCATCCATTGCTTATGCCTCTTCGACAAATACCCTTGCACCTGGGTATGCCACATGGGATGAAACTTCCATGCTGATGAATACCGGATCCAGTAAATCCATGACCTGTCAGGATGAACTCAACAATTTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTAGCAACAGTAGTCTCAGTGGTGTTGGGAACTCTAATAGAAGGATACCGACTTCTGAGATACCAAAACAAGGGAAACAAGCTCCGATGCTTCATGGTTCACGGACTTTGCTGAAGTTTACGCTTCATTGGAAGTGTTTTTGA 645 0.4372 MPMATTPSPADGSGKKVRKPYTITKSRESWTEEEHDKFLEALRLFDRDWKKIEDFVGSKTVSQIRSHAQKHFLKVQKNGTVAHVPPPHPKRKAAHPYPQKASENVLVPLPASIAYASSTNTLAPGYATWDETSMLMNTGSSKSMTCQDELNNFHGNEADIGSKGITQISNSSLSGVGNSNRRIPTSEIPKQGKQAPMLHGSRTLLKFTLHWKCF* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01654 214 CDD SANT 29 72 IPR001005 -
Rops11g01654 214 PANTHER SWI/SNF COMPLEX-RELATED 13 157 - -
Rops11g01654 214 Pfam Myb-like DNA-binding domain 27 71 IPR001005 -
Rops11g01654 214 ProSiteProfiles Myb-like domain profile. 22 72 IPR001005 -
Rops11g01654 214 MobiDBLite consensus disorder prediction 171 195 - -
Rops11g01654 214 MobiDBLite consensus disorder prediction 1 29 - -
Rops11g01654 214 NCBIfam myb-like DNA-binding domain, SHAQKYF class 25 74 IPR006447 GO:0003677
Rops11g01654 214 Gene3D - 30 77 - -
Rops11g01654 214 ProSiteProfiles SANT domain profile. 25 76 IPR017884 -
Rops11g01654 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 76 IPR017930 -
Rops11g01654 214 FunFam protein REVEILLE 6 isoform X1 29 77 - -
Rops11g01654 214 SUPERFAMILY Homeodomain-like 21 77 IPR009057 -
Rops11g01654 214 SMART sant 26 74 IPR001005 -
Rops11g01654 214 MobiDBLite consensus disorder prediction 171 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01654 Rops-Chr11 25339887 25340531 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops11g01654 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01654 - - gsj:114372630 334.339