Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01645 ATGGAGAATGGGGAATGGGATAAAGAGAAGAGAGGTGAAGAAGTGAGGTATGTTGGGGTGAGAAGGAGGCCATGGGGGAAATATGGGGCAGAGATAAGAGACCCAACAAAACCTACAAGAAGACGGTGGTTGGGGACATTTGATACAGCAGAAGAAGCAGCTAGAGCTTATGATCGAGCTGCCATTAGTTTGAGGGGAGCTCTTGCTATAGTGAATTTTCCTTGTGAATATTATTCTCATCTCCCTTTTCTATCATCATCATTATATTCTTCTTCTTCTTCTTCTACTACTACTATTACTATTGGAAGTTCTTCTGCTACACAACAGAGGGAAATTATTGAGTTTGAATGCTTGGATGACAGGGTATTGGAAGACCTTCTTCTTGAGTTTGCAGAAGAGAAGTAA 405 0.4123 MENGEWDKEKRGEEVRYVGVRRRPWGKYGAEIRDPTKPTRRRWLGTFDTAEEAARAYDRAAISLRGALAIVNFPCEYYSHLPFLSSSLYSSSSSSTTTITIGSSSATQQREIIEFECLDDRVLEDLLLEFAEEK* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01645 134 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Rops11g01645 134 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Rops11g01645 134 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Rops11g01645 134 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Rops11g01645 134 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Rops11g01645 134 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Rops11g01645 134 PANTHER DNA-BINDING DOMAIN 11 103 IPR044808 GO:0003700|GO:0009873
Rops11g01645 134 SUPERFAMILY DNA-binding domain 16 76 IPR016177 GO:0003677
Rops11g01645 134 Gene3D AP2/ERF domain 15 76 IPR036955 GO:0003700|GO:0006355
Rops11g01645 134 FunFam Ethylene-responsive transcription factor 2 15 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01645 Rops-Chr11 25071430 25071834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01645 13 127 AP2-EREBP Transcription Factor Family AT3G23230 59.829 3.21e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops11g01645 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01645 - - gmx:100807295 135.576