Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01644 ATGGATGAGGCACGTAAAGGGGAGCAAGAGAAAGAGAAGGGAGGGGAAGAAGTGAGGTACCGTGGTGTGAGGAAGAGGCCATGGGGGAAGTTTGGGGCAGAGATTAGAGACCCAACAAAACCTACGGGAAGACAATGGTTAGGGACATTTGATACAGCAGAAGAAGCTGCTAGAGCTTATGATCGTGCTGCCATTGGTTTGAGGGGTGCTCTTGCAATTCTGAATTTTCCTGATGAGTACCATTCTCATCTCCCTTTTCTATCATCATCTTCTACTACTACCACAGCTATTGGAAGTTCTTCTACTACACAGCAAAAGGAAGTTATTGAGTTTGAGTATTTGGATAACAAGATATTGGAAGACCTTCTTGAGTCATCAGAAGAGAAGGAAAGGAAGGAAGACTAG 405 0.4444 MDEARKGEQEKEKGGEEVRYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYHSHLPFLSSSSTTTTAIGSSSTTQQKEVIEFEYLDNKILEDLLESSEEKERKED* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01644 134 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Rops11g01644 134 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Rops11g01644 134 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Rops11g01644 134 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Rops11g01644 134 PANTHER DNA-BINDING DOMAIN 10 129 IPR044808 GO:0003700|GO:0009873
Rops11g01644 134 FunFam Ethylene-responsive transcription factor 2 18 79 - -
Rops11g01644 134 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Rops11g01644 134 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Rops11g01644 134 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Rops11g01644 134 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01644 Rops-Chr11 25064409 25064813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01644 16 129 AP2-EREBP Transcription Factor Family AT3G23230 57.724 1.38e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops11g01644 AP2 1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01644 - - gmx:100807295 174.481