Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01640 ATGGCGATGGCGACGGCGTCGGTGGTGCCGGCGAACCGGCGGAGAACGATGAACGCAGCGGAGGATATGGACTTCGAGACGACGGAGGGTGTGAAAGCCATCGGAAGCTTCGAGGAGATGGGAATAAGGGATGACCTTCTCCGAGGAATCTACCAATACGGTTTCGAGAAACCCTCGGCGATTCAACAACGTGCCGTTACGCCAATCATTCAGGGCCGTGACGTCATCGCTCAGGCACAATCTGGAACTGGCAAAACCTCCATGATTGCCCTCACCGTTTGCCAAGTCGTTGACACCTCCGTCAGAGAGGTTCAGGCCTTAATTTTGTCACCAACGAGGGAACTGGCTGCGCAGACTGAAAAGGTTATATTGGCTATTGGAGATTTCATAAATATACAAGCGCATGCTTGCATTGGAGGTAAAAGTGTGGGAGAAGATATTAGGAAACTTGAGTATGGAGTCCATGTGGTGTCTGGAACTCCTGGACGAGTCTGTGACATGATTAAAAGGAGAACATTGCGCACAAGAGCTATCAAGTTGCTAGTTCTAGATGAGTCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATCGATATCTCCCACCAGATCTTCAGGTTGTCTTGATTTCTGCTACACTTCCTCATGAAATACTGGAGATTACAAATAAGTTCATGACAGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAGCAATTTTTTGTTGCAGTCGAAAGGGAGGAATGGAAGTTTGATACTCTGTGTGATCTTTATGATACTCTCACTATCACCCAAGCTGTTATATTCTGTAACACTAAGCGAAAGGTGGATTGGTTAACTGAAAAAATGCGTAACAATAATTTCACCGTCTCAGCAATGCATGGCGACATGCCTCAGAAAGAAAGAGATGCAATTATGTCAGAATTTCGTGCTGGAACAACCCGTGTACTGATAACAACAGATGTTTGGGCCCGTGGCCTTGATGTACAACAGGTTTCTCTAGTTATCAACTATGACCTTCCAAACAATCGAGAGCTGTACATTCATCGGATTGGCCGATCTGGACGTTTTGGACGCAAGGGTGTTGCAATAAATTTTGTCAAGAGTGATGATATCAAGATCTTGAGAGATATCGAGCAATATTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTCATCTAA 1227 0.4458 MAMATASVVPANRRRTMNAAEDMDFETTEGVKAIGSFEEMGIRDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELAAQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSAMHGDMPQKERDAIMSEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01640 408 CDD SF2_C_DEAD 248 378 - -
Rops11g01640 408 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 32 391 - -
Rops11g01640 408 FunFam Eukaryotic initiation factor 4A-III 18 239 - -
Rops11g01640 408 Pfam Helicase conserved C-terminal domain 261 369 IPR001650 -
Rops11g01640 408 SMART helicmild6 288 369 IPR001650 -
Rops11g01640 408 CDD DEADc_EIF4AIII_DDX48 37 237 - -
Rops11g01640 408 Pfam DEAD/DEAH box helicase 60 222 IPR011545 GO:0003676|GO:0005524
Rops11g01640 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 391 IPR027417 -
Rops11g01640 408 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 408 IPR001650 -
Rops11g01640 408 SMART ultradead3 54 251 IPR014001 -
Rops11g01640 408 Gene3D - 19 239 IPR027417 -
Rops11g01640 408 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 236 IPR014001 -
Rops11g01640 408 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 35 63 IPR014014 GO:0003724
Rops11g01640 408 Gene3D - 240 408 IPR027417 -
Rops11g01640 408 FunFam Eukaryotic initiation factor 4A-III 242 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01640 Rops-Chr11 24995374 24999566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01640 3 408 Eukaryotic Initiation Factors Gene Family AT3G19760 85.539 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01640 K13025 - gmx:100795032 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01640 11 24995374 24999566 Rops11g01640 11 24995374 24999566 ECH