Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01638 ATGAGCTTCGTGCAGCACTACAAAAATTTCAGTCAGAATGGGAGTACTAAGGGCGGACGGAATCCGAGAGCCGGAGAAGCTAAAGAGTGTAGGTCCATTAATACCAGTATTGAACATCTTCCCTCTAGCCAAATCAAAGAAGGGGGAACCTCAGGTGTTAACGATAATGGGGATCTTGAGAAGTTGGATAATTATAGCATGACAGAAGAACCTGTTTCGATTGATTCTATCATGGAGATAACGGTGTTGGACAAGCAACATGAGTATCTTAGATCCATTGCCTTAGCTGTGCTTTCAAGAAGTACTGGTGATATTCCGTCTTGCAGCAATATTGATGATATAGTTGATCCAGATTCTGGAATGGAGAGAAGCTGCTCGTCAAATGTTAATAGTGGTGCTGTTCCTGTGTGTTCTACCTCGGGTAATATTTCACATCTGGATCAGAGTTTCAGTGGCTATGTTCAACATCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACAAGGGCAAATGTGTGGTCCCTATATTAAGGAACAGTTAGACGAGGGCCTAAATACTGGTTTCTTGCCATTTGAGCTTCCTGTTTATCCTGTGATCAATGGCACATTAATGAACCCTGTACCATTGAATTATTTCAAGCAGTTCCCTGACCATGTTTCCACTGGGTTTGCATATCTGGGTATGGGTATCTCAGGCACAAGGATGCCTCCAAATTTCTCCTCTTGTAAGGATATGGCAGCATATGGGCAAGATAGATCTTTTGAGCATCCTGCTCTTTTGGCTTGTAACCCTGATTCACTGTCTGTTTCACGGTCGCATCTCAATGGCTGCAAGGAATCCATTCACTTAGATTCGAACTCAGAGGCATTCAACAGTATAATATCATTTCAGATGTCAGGTGAAGAATGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAGCATGGACCGCATTCTATTTCAGAATTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTCCAACAATAAGTATGGCACCTTTGTGCTACTGTCTGCAGTAAATGCATTGAAAGGAGATATATCTGGAACCATCTGTAGATCAGGTTCCGCAAGCAATGAGGTTGGTGACATGGTAAACTTACTATGTGAAATATCTGAAAACATTTCTTCCCAATTGCACATGGGTGTCATGAAAGCTGCCCGCAGAGTTGTGCTGGATGGGATTATTGGCGATATCATTGCAGAATTTGTTACAGAAAAGAAACGCAAGAGGCATAAGGTTGAATCAGCTGATCGATCTTCTAAGACTTGCAAGTTGGACAATAAAAAGTCTAAGTTTTCTGTGGAGATGAGTAAAGGTACCGCCATTCCAAGTGAGCCTGCATCTTCCCATATTTTGGATGATCAGGGTTGTCATGAAATTTCCAGACTGTCGTCAACAAACTTTAAATCAGTTGGAAGCATTGAAAACTTTTGGTGGTCATATGCTGTTGTTCGTAAAGTACTTTCTGATTATTGCTTGCAAGTCATGTGGAATGCGGTGTTTTATGACACTGTATCAGAGTACTTATATTCATGGAGGAAGAGGAAACTTTGGTCCCATCCTAAGCCTCAACCATCTGTTAATGGATGTAAAAATGTTGAAAAGATTGAATCAGAAGCTTTGTTTCTCAGGCCAAGTTCCTCTGTATGCAATGCTGATGGCTATATTCAGTTGGGAGTGCTGGCGACGGACAGAGATTATCATCCTCAGTTATTTTCATCTCCTAGTGGCCTCAAATGTGGAAACTTACTAGAAGGTCAAAGATTCTCTTGCACTAACAATAAAGAATTAACATGCATTCTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGTGTCTTTAGCTGATCATATTCGAAGTTTTGTTGAAAAAGAAGTGAACAAATTAATTCCTTCCCCTGAAGAAGACAAATCGAGTGAGGTTGCTGTTAGTGACTGCAGTTTCTCAGAGATATTTACTGGTAAAACATCTATGCAGGAAATTCTAAATGACAAGTCTATGGATCCTGTAAAAGATGGTGATTCATTTTGTATGTCGGCATCTGGAAACCGTATGTCTATTGTAGTCTCAAAAGCATTTGAAGACTTATATGGAAATTTAGATGATGTGGTTGATGAAGAAGATATTGGTGACCTGCCTCCTGGATTTGAAAAGAAATCAAGAACAATCTTCCCACACTATAATTCGAAAATTCGACCTTCAAAGTTATTTGAACGTAATCCTAAGATTCCATCATATGTTGCAACTGCACTTTGCCGTCAGAAGCTTCATGATGAAGTTCTAGAAGAGTGGAAGTCATGGTTTCTTGATTCTGCATTTGATGAAGTTTTAATGTCATCATGTACCATAAAGAAACATTTGCAGTCTGATGGTCATGAGAAAGGGAAAACATTAAGTGCATGCAAGGAACATTTGAATGATGCTACTTCTGGACTGGGAAGAGTGAAGGAAGGAGGAAAAAAATCATCGGAAATTGGAAAGTATACATATTACCGCAAGAAACTGTCGCGGAAAGAGTTGTGTTCCCTGCAATCTGTAACGGAAGATGATTCAGGGCCTTTGAAGCGGCCTGTGGCTAAGTTAAGGAAGCATGTTTCTGGGGATGTGGATGAGACTGCAGAAGTGAAAATCACTGCCGTTAAACGTGGAAATGCTAGGATGATTAAAGGGAAGAAGGATACATCTTCTAAGGGCAAGTCCTCTCCTGTCAATGTCAATTGCAGCTCACTCAGTGATCAATTATCCTTGAAGAATAAAACTAGTCGGAAAGTATTGAAGTTTTCGCGTGCAGTTCAATATGATGTTATAGATGTTGTGAAGTCCAATAAAAAGAGTCTTTCAGCATCAACAGATAATAGTGTTGGCATGAAGGTGGTTAGAAGCAATGGCTGTGATGGCACCATTCAAGGGAAGACAACTGGTCATTGCTCAAGAGGGATACTAAATGCAACAAATAAGGTATCAAAATCAAAAAGGAAACATCAAATAGATGGTATGAAATCCTTGCATCCTGCAAAGGTTTTGAAAATTTCAAATGATGGTGCCGATCTGGGAGCTAGCAAACAGGTTACTAAAGCAAGGAGGAATTCTGCTAAATCCAAGCCATTGAATTTATGTCCTAGATCTGATGGATGTGCTAGGACTTCTATTGACGGGTGGGAATGGCATAAATGGTCTCGAAGTGCCAGTCCTGCATCTAGAGCACGTGTCAGGGGTCTTCCGCGTTTTCAAAACAAGCGCATAGATTCTGAACATAATTTATCTCTGTTATCAAATAGTAAGGGACTTTCTGCTAGAACAAATAGGGTAAAATTGCGTAACCTTCTTGCTGCTGCTGAGGGTGCGGATCTTCTAAAAGTGCCTCAATTGAAGGCAAGAAAAAAGCGATTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAGGCAGAGGACTTTGTGATTGAATATATTGGAGAACTAATTCGTCCTCGGATATCTGATATACGTGAACGTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCCGACTTGATGATGGTTATGTGGTTGATGCTACAAAAAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTTATATATGCAAAACGGCATATAGCCATTGGTGAAGAAATCACGTACAATTACAAGTTTCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCAAAAAAGTGTCGTGGATCACTGAATTAA 3858 0.4025 MSFVQHYKNFSQNGSTKGGRNPRAGEAKECRSINTSIEHLPSSQIKEGGTSGVNDNGDLEKLDNYSMTEEPVSIDSIMEITVLDKQHEYLRSIALAVLSRSTGDIPSCSNIDDIVDPDSGMERSCSSNVNSGAVPVCSTSGNISHLDQSFSGYVQHPSFVSGWMYVNEQGQMCGPYIKEQLDEGLNTGFLPFELPVYPVINGTLMNPVPLNYFKQFPDHVSTGFAYLGMGISGTRMPPNFSSCKDMAAYGQDRSFEHPALLACNPDSLSVSRSHLNGCKESIHLDSNSEAFNSIISFQMSGEECCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHSNNKYGTFVLLSAVNALKGDISGTICRSGSASNEVGDMVNLLCEISENISSQLHMGVMKAARRVVLDGIIGDIIAEFVTEKKRKRHKVESADRSSKTCKLDNKKSKFSVEMSKGTAIPSEPASSHILDDQGCHEISRLSSTNFKSVGSIENFWWSYAVVRKVLSDYCLQVMWNAVFYDTVSEYLYSWRKRKLWSHPKPQPSVNGCKNVEKIESEALFLRPSSSVCNADGYIQLGVLATDRDYHPQLFSSPSGLKCGNLLEGQRFSCTNNKELTCILESVENELHFSSKVSLADHIRSFVEKEVNKLIPSPEEDKSSEVAVSDCSFSEIFTGKTSMQEILNDKSMDPVKDGDSFCMSASGNRMSIVVSKAFEDLYGNLDDVVDEEDIGDLPPGFEKKSRTIFPHYNSKIRPSKLFERNPKIPSYVATALCRQKLHDEVLEEWKSWFLDSAFDEVLMSSCTIKKHLQSDGHEKGKTLSACKEHLNDATSGLGRVKEGGKKSSEIGKYTYYRKKLSRKELCSLQSVTEDDSGPLKRPVAKLRKHVSGDVDETAEVKITAVKRGNARMIKGKKDTSSKGKSSPVNVNCSSLSDQLSLKNKTSRKVLKFSRAVQYDVIDVVKSNKKSLSASTDNSVGMKVVRSNGCDGTIQGKTTGHCSRGILNATNKVSKSKRKHQIDGMKSLHPAKVLKISNDGADLGASKQVTKARRNSAKSKPLNLCPRSDGCARTSIDGWEWHKWSRSASPASRARVRGLPRFQNKRIDSEHNLSLLSNSKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAIGEEITYNYKFPLEEKKIPCNCGSKKCRGSLN* 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01638 1285 ProSiteProfiles GYF domain profile. 303 353 IPR003169 GO:0005515
Rops11g01638 1285 SMART set_7 1146 1269 IPR001214 GO:0005515
Rops11g01638 1285 Gene3D SET domain 1119 1285 IPR046341 -
Rops11g01638 1285 CDD SET_SETD1 1134 1281 IPR037841 GO:0042800|GO:0048188
Rops11g01638 1285 Gene3D - 294 371 IPR035445 -
Rops11g01638 1285 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 102 1285 IPR044570 GO:0042800|GO:0051568
Rops11g01638 1285 SMART PostSET_3 1269 1285 IPR003616 -
Rops11g01638 1285 ProSiteProfiles Post-SET domain profile. 1269 1285 IPR003616 -
Rops11g01638 1285 ProSiteProfiles SET domain profile. 1146 1263 IPR001214 GO:0005515
Rops11g01638 1285 MobiDBLite consensus disorder prediction 8 27 - -
Rops11g01638 1285 Pfam SET domain 1158 1262 IPR001214 GO:0005515
Rops11g01638 1285 SUPERFAMILY GYF domain 298 357 IPR035445 -
Rops11g01638 1285 SUPERFAMILY SET domain 1142 1282 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01638 Rops-Chr11 24916537 24935751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01638 1145 1285 C2H2 Transcription Factor Family AT2G23740 36.810 2.26e-18 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops11g01638 SET 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01638 - - ccaj:109804065 1747.64