Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01627 ATGGCTCAAACTCACACACCCACAGGTGCTCCCACTATTAGCCCCACCATAAGCAAACCATGTAATCCTCCTCCACAACCTGGTCTCAGTTTGATGGTTCTTTTGGCAGCCATTGTGTGTGCCTTTCTCTGTGCTCTTGGCCTCAACACTATGTTACAATGTGTGTTCCAATGTGCTAATCGTGTCATTATGGAGCCTTTGCAATGGATTGCTTCTAGGAGGATCAATTCAGGGCTCAAGAAGAAAGAAATGGTAGCTTTGCCAACCTCAACTTACACCAATTCAGGCTCTCCATCATCTTCAGCTTCTAATTGTGCCATTTGCTTAGTGGAATTCTCTGATGGGGACAACATAAGGTTCCTCCCAAAGTGTAATCACCCTTTTCATGTGGCTTGCATTGATAAGTGGCTGCTTTCTCATTCTTCTTGCCCTACTTGCAGGAACCTCCTCAAGTCTAATGATTCAGTAAACTGCTTACGAATTGTCATATCTTAG 495 0.4424 MAQTHTPTGAPTISPTISKPCNPPPQPGLSLMVLLAAIVCAFLCALGLNTMLQCVFQCANRVIMEPLQWIASRRINSGLKKKEMVALPTSTYTNSGSPSSSASNCAICLVEFSDGDNIRFLPKCNHPFHVACIDKWLLSHSSCPTCRNLLKSNDSVNCLRIVIS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01627 164 SUPERFAMILY RING/U-box 104 152 - -
Rops11g01627 164 Pfam Ring finger domain 104 147 IPR001841 -
Rops11g01627 164 SMART ring_2 105 146 IPR001841 -
Rops11g01627 164 FunFam E3 ubiquitin-protein ligase ATL6 68 153 - -
Rops11g01627 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 152 IPR013083 -
Rops11g01627 164 CDD RING-H2_EL5-like 105 147 - -
Rops11g01627 164 PANTHER RING-H2 FINGER PROTEIN ATL78 30 152 IPR044602 GO:0016567|GO:0016740
Rops11g01627 164 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01627 Rops-Chr11 24813128 24813622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01627 9 150 C3H Transcription Factor Family AT3G10910 40.252 2.11e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01627 - K19040 gmx:100803003 246.514