Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01606 ATGAATGCGATGACTGTTGCAGGCAAGCCGCAACACAAGGCTTACTGTGAAAAGCATAGTTTAGAGCAGAGGGAAAAGGCTGAAAGTCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAAGAAAATTAGGGGTCCCAGTGTTTGTCATGTCTCTTACATTGATGCTAGTTTGCATCCAACAAAGGAGTTTAGGAATGGAACTGAGTTGATATGGCAAGTACCTGAATCACCTAAAGGTGTTCTCTTTCTGGCTCATGGATGTAATGGAACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTTTCAATATTTCATGAGAATAAAGCTCAGATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTCAGTTGATGGACCCCGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTCTGTCAAATCTGTCAACTATTCCAGAGGGCCGGTTAGAAATTGCAAGGGAAGGTGGTATCCCTTTACTGGTTGAAATTGTTGAATCAGGTACCCATAGGGGAAAGGAAAATGCTGCGTCCATTATCCTGCAATTATGCCTTCATAGTTCCAAGTTTTGTACTCTGGTTTTGCAAGAAGGAGTAGTACCTCCCCTAGTTGCATTGTCTCAATCTGGTACACCAAGAGCAAAGGAAAAGGCCCAACAACTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTACTGGCAAGGGAAAATCATGA 726 0.4229 MNAMTVAGKPQHKAYCEKHSLEQREKAESQKHGIEELKSIKKIRGPSVCHVSYIDASLHPTKEFRNGTELIWQVPESPKGVLFLAHGCNGTLRGKKDAATALFNLSIFHENKAQIVQAGAVKFLVQLMDPADGMVDKAVALLSNLSTIPEGRLEIAREGGIPLLVEIVESGTHRGKENAASIILQLCLHSSKFCTLVLQEGVVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01606 241 Pfam Armadillo/beta-catenin-like repeat 110 146 IPR000225 GO:0005515
Rops11g01606 241 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 119 160 IPR000225 GO:0005515
Rops11g01606 241 PANTHER U BOX DOMAIN-CONTAINING 88 229 - -
Rops11g01606 241 MobiDBLite consensus disorder prediction 219 241 - -
Rops11g01606 241 FunFam RING-type E3 ubiquitin transferase 77 235 - -
Rops11g01606 241 Gene3D - 82 238 IPR011989 -
Rops11g01606 241 SUPERFAMILY ARM repeat 95 229 IPR016024 -
Rops11g01606 241 SMART arm_5 108 147 IPR000225 GO:0005515
Rops11g01606 241 SMART arm_5 148 188 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01606 Rops-Chr11 24426274 24430369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01606 89 239 U-box Gene Family AT2G23140 74.172 4.27e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01606 - - qsu:112019258 269.626