Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01602 ATGGTAGAAACAATGAAGATTTCAACACTTGCAATTATGCTATTCTTGTGCTTTTCTTGTGAGCTATTAGTCCTTTGCAATGGTAGTTTAGACAGTGAGAGCACTTTGAGAGTGCTTTTGGAGGTGAAGTCATCATTTTTGGAAGACCCTGAAAACGTTCTGAGTGATTGGTCAGAGAACAACACAGATTATTGTAGTTGGAGAGGGGTGTCATGTGAGCTGAAGAAGTTAAACTCCAAAACTTTGAATGTCTCGGTGCCAGTGGTGGTGGGACTCAACCTGTCCAACTCGTTACTCACTGGGTCAATATCACCCTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGACCTCTCTTGTAACCGTCTCAAGGGTCCCATTCCACCTAGCATATCAAACCTTACTTCATTGGAATCTTTGCTGCTTTACTCCAACCAACTCACTGGTCATATCCCAACTGAGTTTGGCTCGCTACTAAGTCTCCGAGTTTTGCGAATCGGTGACAATGGACTCACTGGCATGATTCCCGCTTCACTTGGGAATCTTGTTAACCTTGTCAACCTTGGTTTAGCTTCATGCAGACTCACCGGGTCGATTCCACCCCAACTCGGTCAACTCAGTGAGTTGGAGAATCTGATCCTGCAGGACAATGAGTTGACTGGTCCGATTCCATCCGAGTTGGGGAACTGCTCAAGCCTCATCATCTTTACTGCTGCTGGCAACAGACTCAACTGGATCCCGAGTGAACTGGGTCAACTCAGTAAACTCCAAACTCTCAACCTTGCCAACAACAGCCTGAAAGGAGAGATTCCGAGTCAACTCGGTCAACTCAGTGAGCTTGTTTATCTGAATTTAATGGGGAACCAAATTGAGGGTAGTATTCCACCGTCTCTAGCTCAATTGGGTAAGCTTCAAAATCTTGACTTGTCCATGAACAAGCTCAGTGGTGGAATTCTAAAAGAGTTAGGCAATATGGGTCAGTTAAATTACATGGTTCTCTCTGGGAATCAACTCTATGGGACAATTCCAAGAACCATATGTTCCAATGCAACAAGTTTGGAACACTTGATGATATCAGGGAGTGGACTTCATGGTGAGATTCCATCTGAGTTGAATCGATGCCAAGCATTGAAACAACTTGATTTGTCTAATAATTCTCTTAATGGATCAATACCTCTTGAGTTTTACGGATTGGTGGGGCTAACTGATATCTTGCTTTACAACAACAACTTGGTTGGTTCAATCTCTCCCTTCATAGGGAACCTCACTAACATGCAGACACTTGCATTGTATGGCAACAAGTTGCAGGGTGCTCTGCCAAGAGAGATTGGGAAGCTTGGGAAGCTGGAAATACTGTTTCTTTATGATAATCAGTTATCAGGGAAGATACCTAAGGAGATTGGTAATTGTTCAAGCTTACAAATGATTGATTTCTTTGGGAACCATTTTAGTGGGAGAATTCCTATCACTATTGGGAGACTGAAAGAGTTGAATTTCCTTCACCTTAGGCAGAATGAGCTTGTGGGTGAGATTCCAGCCACCCTTGGTCATTGTCATAAACTGAATGTGTTGGATTTGGCAGATAATCAGCTCTCAGGTGGCATTCCGGCAACATTTGGATTCCTCAAAGACTTGAAGCAGTTCATGCTCTACAACAATTCTCTTGAAGGTAGCCTTCCTGACCAACTGGTAAATGTTGCAAACCTGACAAGGGTGAATCTTTCAAAGAACAGACTGAATGGTAGTTTGGCTTCATTGTGTAGCTCCCGGTCCTTTCTTTCATTTGATGTCACAGATAATGCATTTGACAGTGAAATCCCCTCTCAATTGGGGAATTCACACGCCCTTGAGAGGTTAAGATTAGGTAACAACAAATTTTCTGGTGAAATCCCAAGGACATTGGGAAAAATCACTGAATTCTCATTGTTAGACCTCTCAGGTAATTCACTCACAGGACCAATACCAGATGAGCTTTCTTTGTGTAATAAACTTGCCCACATTGATTTGAACAATAACCTTCTATCTGGACACATACCATCATGGCTTGGAAGTTTTCCTAGATTGGGAGAGCTTAAACTCTCCTCCAATCAATTTTCTGGGCCTCTTCCATTAGGCCTATTCAAACTACCCAGGTTGCTGGTCCTTTCCTTGAATAACAATTCTCTTAATGGAAGCCTCCCTGGTGATATTGGTGATCTTGAATCCCTTAATGTCCTTAGACTAGACCATAACAAGTTCTCTGGTTCAATCCCTCCTGCAATAGGTAAGTTAAGGAACCTCTATGAGCTCCAGCTATCTAGAAATAACTTTAATGGTGATATACCAATTGAGATTGGAAATCTTCAAAATCTCCAAAGCATTTTAGACCTAAGTTACAATAATCTCTCTGGTCACATCCCACCTTCACTTGGTATGCTATCAAAACTGGAAGCACTTGATCTTTCTCACAATCAACTCACTGGAGAAGTCCCTCTGTTGGTTTGCGAAATGAGGAGCTTAGAAAAGCTTGATCTCTCCTACAATAACTTTAAAGGTACATTGGATAAGCAGTTCTCTCGCTGGCCATATGAGGCATTTGAAGGGAACTTACATCTTTGTGGAGCCTCTTTTAGGCACTGCAACGCATCCCACAATAAGATATCAGGCTTAAGTGAGACAACAGTGGTTATAGTCTGTGCCATTTCAACTTTAGCTGCAATTGCATTACTAGTACTTGCAGTGAGCATGTTCTTGAAAAACAAGCTAGTCCTTTTCAGGAAAGGCAGTGAAGTGAGTTGTGTTTTCTCCTCCTCTTCTTCCCAAGCAAAGAGAAGACCACTTTTCCCACTAAATGCTGTGGGAAAGAGAGATTTCAGGTGGGAAGATATCATGGATGCCACAAACAATTTAAGTGATGACTTCATAATTGGCTCTGGAGGTTCTGGGACAGTCTATAGAGTTGAATTGCCCACTGGAGAGACTGTGGCTGTCAAGAAGATTTCATTGAAAGATGATTATATGTTAAACAAAAGCTTTATGAGAGAAGTTAAGACTTTGGGGAGGGTTAAACATAGACATCTGATGAAACTAATTGGTTGTTGTAGCAATAGAAACAAGGGAACAGGTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTATGGGATTGGCTACATGGAAAACCTCTCAAAGCAAGCAAAGCAAAGGGGATCCTTGATTGGGACACAAGGTTCAAAATTGCTATGGGATTAGCTCAAGGAGTGGCGTACCTTCATCATGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAACATATTGCTAGATTCCAAAATGGATGCACACTTGGGAGATTTTGGACTTGCAAAAACACTCATTGAGAATCATGACTCTAATACTGAGTCCAATTCTTGTTTTGCAGGGTCTTATGGTTACATAGCCCCAGACTATGCATACTCACTGAAGGCAACAGAGAAAAGTGATGTTTACAGCATGGGAATTGTGCTTATGGAACTTGTTACTGGTAAAATGCCAACAGATGTAGCTTTCAGAGCTGAGATTGACATGGTGAGATGGGTGGAGATGCACATTGATATGCAAAGTGATGAAATGATAGATCCTGAGCTCAAACCCCTTTTACCGGATGAAGAGTTTGCTGCATTGCAAGTGCTTGAGATAGCCATACAATGCACAAAAACTGCACCACAGGAAAGGCCATCATCAAGACAAGTATGTGATCTTCTTGTACATGTTTCCAACAACAAAAAGGTGAACTTTGAGAAGATGAATTTGGATCATTGCAAGTGA 3801 0.4196 MVETMKISTLAIMLFLCFSCELLVLCNGSLDSESTLRVLLEVKSSFLEDPENVLSDWSENNTDYCSWRGVSCELKKLNSKTLNVSVPVVVGLNLSNSLLTGSISPSLGRLQNLLHLDLSCNRLKGPIPPSISNLTSLESLLLYSNQLTGHIPTEFGSLLSLRVLRIGDNGLTGMIPASLGNLVNLVNLGLASCRLTGSIPPQLGQLSELENLILQDNELTGPIPSELGNCSSLIIFTAAGNRLNWIPSELGQLSKLQTLNLANNSLKGEIPSQLGQLSELVYLNLMGNQIEGSIPPSLAQLGKLQNLDLSMNKLSGGILKELGNMGQLNYMVLSGNQLYGTIPRTICSNATSLEHLMISGSGLHGEIPSELNRCQALKQLDLSNNSLNGSIPLEFYGLVGLTDILLYNNNLVGSISPFIGNLTNMQTLALYGNKLQGALPREIGKLGKLEILFLYDNQLSGKIPKEIGNCSSLQMIDFFGNHFSGRIPITIGRLKELNFLHLRQNELVGEIPATLGHCHKLNVLDLADNQLSGGIPATFGFLKDLKQFMLYNNSLEGSLPDQLVNVANLTRVNLSKNRLNGSLASLCSSRSFLSFDVTDNAFDSEIPSQLGNSHALERLRLGNNKFSGEIPRTLGKITEFSLLDLSGNSLTGPIPDELSLCNKLAHIDLNNNLLSGHIPSWLGSFPRLGELKLSSNQFSGPLPLGLFKLPRLLVLSLNNNSLNGSLPGDIGDLESLNVLRLDHNKFSGSIPPAIGKLRNLYELQLSRNNFNGDIPIEIGNLQNLQSILDLSYNNLSGHIPPSLGMLSKLEALDLSHNQLTGEVPLLVCEMRSLEKLDLSYNNFKGTLDKQFSRWPYEAFEGNLHLCGASFRHCNASHNKISGLSETTVVIVCAISTLAAIALLVLAVSMFLKNKLVLFRKGSEVSCVFSSSSSQAKRRPLFPLNAVGKRDFRWEDIMDATNNLSDDFIIGSGGSGTVYRVELPTGETVAVKKISLKDDYMLNKSFMREVKTLGRVKHRHLMKLIGCCSNRNKGTGWNLLIYEYMENGSVWDWLHGKPLKASKAKGILDWDTRFKIAMGLAQGVAYLHHDCVPKIIHRDIKSSNILLDSKMDAHLGDFGLAKTLIENHDSNTESNSCFAGSYGYIAPDYAYSLKATEKSDVYSMGIVLMELVTGKMPTDVAFRAEIDMVRWVEMHIDMQSDEMIDPELKPLLPDEEFAALQVLEIAIQCTKTAPQERPSSRQVCDLLVHVSNNKKVNFEKMNLDHCK* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01602 1266 PRINTS Leucine-rich repeat signature 806 819 - -
Rops11g01602 1266 PRINTS Leucine-rich repeat signature 377 390 - -
Rops11g01602 1266 Gene3D Ribonuclease Inhibitor 33 202 IPR032675 -
Rops11g01602 1266 PANTHER UNNAMED PRODUCT 542 1178 - -
Rops11g01602 1266 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 924 1043 - -
Rops11g01602 1266 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Rops11g01602 1266 SUPERFAMILY L domain-like 590 868 - -
Rops11g01602 1266 ProSiteProfiles Leucine-rich repeat profile. 808 829 IPR001611 GO:0005515
Rops11g01602 1266 Gene3D Ribonuclease Inhibitor 540 877 IPR032675 -
Rops11g01602 1266 Gene3D Ribonuclease Inhibitor 377 539 IPR032675 -
Rops11g01602 1266 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 202 - -
Rops11g01602 1266 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 395 487 - -
Rops11g01602 1266 Pfam Protein kinase domain 968 1243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01602 1266 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 585 877 - -
Rops11g01602 1266 Gene3D Transferase(Phosphotransferase) domain 1 1044 1265 - -
Rops11g01602 1266 SUPERFAMILY RNI-like 91 412 - -
Rops11g01602 1266 FunFam Leucine-rich repeat receptor-like protein kinase 1044 1263 - -
Rops11g01602 1266 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 294 394 - -
Rops11g01602 1266 SUPERFAMILY Protein kinase-like (PK-like) 942 1247 IPR011009 -
Rops11g01602 1266 Pfam Leucine rich repeat 758 819 IPR001611 GO:0005515
Rops11g01602 1266 Gene3D Phosphorylase Kinase; domain 1 925 1043 - -
Rops11g01602 1266 ProSitePatterns Protein kinases ATP-binding region signature. 969 992 IPR017441 GO:0005524
Rops11g01602 1266 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 488 584 - -
Rops11g01602 1266 SMART LRR_typ_2 709 732 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 494 518 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 422 445 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 206 230 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 110 133 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 830 861 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 134 157 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 253 277 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 566 589 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 325 349 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 446 470 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 781 806 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 733 757 IPR003591 -
Rops11g01602 1266 SMART LRR_typ_2 158 181 IPR003591 -
Rops11g01602 1266 SMART serkin_6 963 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g01602 1266 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 208 278 - -
Rops11g01602 1266 SUPERFAMILY L domain-like 380 600 - -
Rops11g01602 1266 Gene3D Ribonuclease Inhibitor 203 375 IPR032675 -
Rops11g01602 1266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1094 1106 IPR008271 GO:0004672|GO:0006468
Rops11g01602 1266 SMART LRR_sd22_2 806 838 - -
Rops11g01602 1266 SMART LRR_sd22_2 446 472 - -
Rops11g01602 1266 SMART LRR_sd22_2 110 136 - -
Rops11g01602 1266 SMART LRR_sd22_2 374 395 - -
Rops11g01602 1266 SMART LRR_sd22_2 277 309 - -
Rops11g01602 1266 ProSiteProfiles Protein kinase domain profile. 963 1251 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01602 Rops-Chr11 24343498 24347383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01602 168 803 Receptor kinase-like Gene Family AT1G17750 35.938 4.75e-93 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops11g01602 Pkinase 7.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01602 - - gmx:100801889 1892.47