Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01601 ATGGCATCTTCCCAAGTTGAGATCGCTTCTTCTTCTCCCTTTGGTTGTGTTCTGAGGGACCGTAATCACCGTGATGGATGTAGAGAAAGCAACGTGAAGGCCACGCATGTAGCTTTCCAAAGAAACATTAAGAACTTTGTAATGGACCACCTTAACACGTGCATGTCCATGTCCTCTGATTCAACAACAAACGAGAACAACAACAACAACCAAGGTGAGGTGAACAACAACAATGGTTCTTCTTGGGCTTCAAAACCTTCCAAGAACAACAATCTTGCAAGGCTTCGTATCACAAGAAACGATCACAACAACAACAAGAAGGAAAGAGATGAATCTTCTTTGGCTTCATTGATCAGCCCGAGACACTCAAGGCTTCTTGATCGATGGGCTGCAAGGCAAGCTCGTGAGATGATTTCAAATTTGGAGAATGAGGCTGACTTGTTAGCCGTTGACAACAACAACAATGGCATGCTTTCAAGCACATCTAGTTCTACCTCTGATGAGTGTTCCTCCGAAATCCCAAATCTTGGTGCATCTTCCCTTGTTCAGATATGGGAAAAGAGGCTCAACCAATCCAATGGTTCCAAACCCAACACCCCAGGAGAGAGGGTTGCTACTAGTGCAACCAGCAACAATGAGAATGCATTTTCTGTTGAAGAACAAAGTAGAGGGTCAGAAGAATCAGGGGAATGCTTTGAAGGACCACAAGAGAGTAATGAGGAATCATTCCCTGATTGGGATTCTGATAAGACAACACATAGTGATCAATCCATTTCACCAAGAGGGCATAGCTGTTCATCTGAGAGTGATAGGGTCAGTGTTCAAGATATCATAAAGAAACTCACAGCTACAAACCAAAATCAGAGTCCACCACAGTCTGTTGGTGATGACAATGACCATGAAGGGTGTGGTAGCAGCGTTACAAGTTCTCCTTGTAGAGACCATGATTGTGGTTCCACACAAGAACATTCAGAGCAAACGGCTATACCTCAAGTCACTTGTTCCCTGCGAATTAGAGGGCGCAAAGCTTTCAATGATTTGCTTATGCAGTTGGAGCATGACAGGTACGGGGAGCTCAAGAACCTGGCAGTGCGTGGAGCAGTGTCCAGGTTCACACAAAGAGGGCGCATTCAGTCAGTGCTTCGACTTAGATTATTACAACGTGGGGTGGCAGCTAATGATCCATCTCCCCATAAATCAACAGCATCTGATGAAGTGAACAGACAACTACAGGGATCCGCAATTATGCAACTAAGGGAAAGATTTAACAATGGAGTTGAACATAGAACTACGGTCCAAGCAGAAGTACATGTAGCTAACCAAAGAAGTCCTCGTGGGGAGACAGCAAACAACACCACACAATTGGATAACTCTCCCACCTCTGATCAACTCAGTAAAGACACAAGTAACCAGGCTGCTCATGGCACTGCCAATCACTGTACACAATCCACACAAAAGTCAGCGTCTCAGACAAGTGCAGATCATAATAAAGAAGAAGCTCATCCACGTTCAGAAATCACATTCCAAGAAACGTGTGTTAAGGCTCAGCATGATGGCTCACGGGAAACTGCTGAGGCAACTACATCCATGACAAATTCAAATCTAAATCAGAAGGCAGATAAGGTAGAGACAAGCAACCAACGGAATGCTAAGGCTGAAAGCAGTTACCATCAGACAGTAGATGAGGAAGAGCCAAGTAGCCAGCAGTATGCTAAAACCATTTATGTCGTGACAGCAGAAGAAGAAGAAGAGGCAAGTAACCAGAACTATGCTGAAAGCAGTTATGAAGAGATAGAGGAAGAGTTAGAGGCCATTGACCAGAATTATGATGAAACTAATTATGACTGGATCAGTGAAATTTCTCGGCCTAGAAGCTACTGGGAAGAGCGCAGGCAAGCATGGTATAGAGAGATGCTTGACACTGGTTCTCACAGTGAGGATATAAGAGAGCTTCTTCAAAGAAGGACAGTGTCAACTTTCCTTTCTAGTGACTTCCGGGAAACAATGGATAGATTGATGCAATCTCACAGGGGAACACAAACACATTTAGTCAGTTGTCAAGATGATGAGGAAGACAGCCAAGGGTTGATGGCATTTTTACAAGAACGCTTGCATTCTGCAAGAACTCCTCAAGAAGATGGAAGAGAGAGAGGAGAGGAGAGGATAGAAGTGGAAGAAGAGGAGGAGGAGAAGGCAGATGAGCAGGAGCATGAGGGGGAGAGCTTGACAAGTGGCTCAAGTCATGAAGTTGGTGATTTTTATTATAATCAATCCTCATCATGGAGTTTCAGAGACAATGAAGCTGGTGATGATTTTGATAGGGTTGCTTCTACATCTTCACAACCTTATCAATCCCAGTCTTTCTATCAAGATAGTAGGCGAAACTCTTCTTCCACCAATCATCATTCAATTGAAATGGAACTCATATATGATCTGAGAGGCCATATGGAGCAACTTTATAATGAGATGTCTGAGCTGAGGAAATCAATAAAAAGCTGCATGGATATGCAAATGCAATTACAGAAATCCACGATGAACCAAGATGATCACGCAGTTAAAAAGGAAGAAAGGAAGTCCCATAACAGGGCTCCAAAGAAAGGCAACTGCTGCATTTGCTGTGAGATGAAAGTTGACTCGCTTTTATACAGGTGTGGACACATGTGTGCGTGTCTGAAGTGTGCCCACGAGTTGCAATGGAACAGTGGAAAATGTCCAATATGTCGAGCTAAAATAGTAGATGTTGTTCGAGTTGGTGAAATTGATTCTTCATCCTCCGTTGTTTGGCTGCAATGTTTCAAGAACAAAAGTAGTTGTTATGTGGGTGCACTTGTTGAATGTCTGGGTAATAAGAGAAACTTTAGTGGCAATACTTTTGTCCCGGTTATTGGGGGACCTAATACCAGTAGCCATGCTCCCGATAACCGTTCTAGAGGATCAGGCACAGTTGGCAGCATGTCGAAATTCACATCCGGTGAAACGTATTCAGTCCTTCAAGCACCCTGCCTTCAACACTGGTTTAAAAACTGGCAAACACTTAGGAAACACAGACTGACAGCTAGTAATTTTGCTGGTGCAATCGGATTTTGGCCTCAGCGAAGGGTTCAGCTGTGGTTAGAGAAGATTGGTGCTATTGAACCGTTTTCTGGAAACCTTGCCACCTGTTGGAGCAATATCAAAGAAGAGGAAGCACTTGAAAGACACAAACTGATAACTGGAAATACTGGTGCACCCCCAGAAGACAACTGGCTAGCTGCCTCACCGGATGCTATAGTTGACAGGATGGTTTATGAATTGCCTTCTTGTGGAGTACTGGAGATAAAGTGTCCGTATTTCAATGGAGACATGAGAAAAGCTTTCCCTTGGTTTCGAATTCCAGTTCACTATGTTCCTCAAGCTCAGGGTTTAATGGAGATTCTAGGAAGGGATTGGATGGATTTTTATGTTTGGACCCCTAATGGTAGTAGTCTATTCAGGTTACATCGTGATGTAGAGTACAACAACAACAACAACCAAGCCTTATATCACTAG 3528 0.4365 MASSQVEIASSSPFGCVLRDRNHRDGCRESNVKATHVAFQRNIKNFVMDHLNTCMSMSSDSTTNENNNNNQGEVNNNNGSSWASKPSKNNNLARLRITRNDHNNNKKERDESSLASLISPRHSRLLDRWAARQAREMISNLENEADLLAVDNNNNGMLSSTSSSTSDECSSEIPNLGASSLVQIWEKRLNQSNGSKPNTPGERVATSATSNNENAFSVEEQSRGSEESGECFEGPQESNEESFPDWDSDKTTHSDQSISPRGHSCSSESDRVSVQDIIKKLTATNQNQSPPQSVGDDNDHEGCGSSVTSSPCRDHDCGSTQEHSEQTAIPQVTCSLRIRGRKAFNDLLMQLEHDRYGELKNLAVRGAVSRFTQRGRIQSVLRLRLLQRGVAANDPSPHKSTASDEVNRQLQGSAIMQLRERFNNGVEHRTTVQAEVHVANQRSPRGETANNTTQLDNSPTSDQLSKDTSNQAAHGTANHCTQSTQKSASQTSADHNKEEAHPRSEITFQETCVKAQHDGSRETAEATTSMTNSNLNQKADKVETSNQRNAKAESSYHQTVDEEEPSSQQYAKTIYVVTAEEEEEASNQNYAESSYEEIEEELEAIDQNYDETNYDWISEISRPRSYWEERRQAWYREMLDTGSHSEDIRELLQRRTVSTFLSSDFRETMDRLMQSHRGTQTHLVSCQDDEEDSQGLMAFLQERLHSARTPQEDGRERGEERIEVEEEEEEKADEQEHEGESLTSGSSHEVGDFYYNQSSSWSFRDNEAGDDFDRVASTSSQPYQSQSFYQDSRRNSSSTNHHSIEMELIYDLRGHMEQLYNEMSELRKSIKSCMDMQMQLQKSTMNQDDHAVKKEERKSHNRAPKKGNCCICCEMKVDSLLYRCGHMCACLKCAHELQWNSGKCPICRAKIVDVVRVGEIDSSSSVVWLQCFKNKSSCYVGALVECLGNKRNFSGNTFVPVIGGPNTSSHAPDNRSRGSGTVGSMSKFTSGETYSVLQAPCLQHWFKNWQTLRKHRLTASNFAGAIGFWPQRRVQLWLEKIGAIEPFSGNLATCWSNIKEEEALERHKLITGNTGAPPEDNWLAASPDAIVDRMVYELPSCGVLEIKCPYFNGDMRKAFPWFRIPVHYVPQAQGLMEILGRDWMDFYVWTPNGSSLFRLHRDVEYNNNNNQALYH* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01601 1175 MobiDBLite consensus disorder prediction 57 115 - -
Rops11g01601 1175 CDD PDDEXK_lambda_exonuclease-like 1003 1173 - -
Rops11g01601 1175 Gene3D - 1006 1175 IPR011604 -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 257 295 - -
Rops11g01601 1175 Coils Coil 715 737 - -
Rops11g01601 1175 ProSiteProfiles Zinc finger RING-type profile. 869 908 IPR001841 -
Rops11g01601 1175 Pfam Zinc finger, C3HC4 type (RING finger) 866 913 - -
Rops11g01601 1175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 843 918 IPR013083 -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 190 222 - -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 964 983 - -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 704 750 - -
Rops11g01601 1175 SUPERFAMILY Restriction endonuclease-like 993 1174 IPR011335 -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 773 800 - -
Rops11g01601 1175 Pfam YqaJ-like viral recombinase domain 1009 1138 IPR019080 -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 522 554 - -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 772 800 - -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 57 98 - -
Rops11g01601 1175 Coils Coil 816 836 - -
Rops11g01601 1175 Coils Coil 588 615 - -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 436 568 - -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 99 115 - -
Rops11g01601 1175 Coils Coil 131 151 - -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 436 491 - -
Rops11g01601 1175 SUPERFAMILY RING/U-box 868 914 - -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 190 328 - -
Rops11g01601 1175 PANTHER BNAC05G24000D PROTEIN 1 917 - -
Rops11g01601 1175 MobiDBLite consensus disorder prediction 706 721 - -
Rops11g01601 1175 CDD mRING-HC-C3HC5_NEU1 866 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01601 Rops-Chr11 24332549 24339920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01601 869 917 C3H Transcription Factor Family AT3G06140 40.816 1.96e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01601 - - gmx:100796627 1061.6