Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01599 ATGGAAGAGAGAGAGGAGAGGATAGAATTGGAAGAAGAGGAGGAGGAGAACGCAGATGAGCAGGAGCATGAGGAGGAAAGCTTGACAAGTGGTTCAAGCCATGAAGTTGGTGATTATTATTATAATCAATCCTCATCATGGAGCTTCAGAGACAATGAAGCTGGTGATGATTTTGATAGGGTTGCTTCTACATCTTCACAACCTTATCAATCTCAGTCTTTCTATCAAGATAGTAGGCGAAACTCTTCATCCACCAATCAACATTCAATTCTAAGGAAGTCAATAAAGAGCTGCATGGATATACAAATGCAATTACAACAATCCATGAACCAAGACGTTCACACAGAGGAAGAAAGGAAGTCCCATAACATGGCTCCAAAGAAAGGCAACTGCTGCATTTGCTGTGAGATGAAAGTTGACTCGCTTTTATACAGGTGTGGACACATGTGTGCGTGTCTGAAGTGTGCCCATGAGTTGCAATGGAACAGTCGAAAATGTCCAATGTGTCGAGCTAAAATAGTAGATGTTGTTCGAGTATACGTTGATGCTTAG 552 0.4167 MEEREERIELEEEEEENADEQEHEEESLTSGSSHEVGDYYYNQSSSWSFRDNEAGDDFDRVASTSSQPYQSQSFYQDSRRNSSSTNQHSILRKSIKSCMDIQMQLQQSMNQDVHTEEERKSHNMAPKKGNCCICCEMKVDSLLYRCGHMCACLKCAHELQWNSRKCPMCRAKIVDVVRVYVDA* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01599 183 ProSiteProfiles Zinc finger RING-type profile. 131 170 IPR001841 -
Rops11g01599 183 Pfam Zinc finger, C3HC4 type (RING finger) 128 175 - -
Rops11g01599 183 PANTHER BNAC05G24000D PROTEIN 4 90 - -
Rops11g01599 183 MobiDBLite consensus disorder prediction 58 86 - -
Rops11g01599 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 182 IPR013083 -
Rops11g01599 183 MobiDBLite consensus disorder prediction 1 23 - -
Rops11g01599 183 MobiDBLite consensus disorder prediction 1 39 - -
Rops11g01599 183 Coils Coil 1 24 - -
Rops11g01599 183 MobiDBLite consensus disorder prediction 59 86 - -
Rops11g01599 183 SUPERFAMILY RING/U-box 130 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01599 Rops-Chr11 24329759 24332443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01599 1 181 C3H Transcription Factor Family AT3G07200 26.904 3.73e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01599 - - ccaj:109812885 238.424