Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01585 ATGTTGAATCAGAGCATGGATCCTGCAAGAGATGGTGGTGGTGTTGCAGGGACCGTGCTAATTCCCATGCGGTTCGTGTGGCCTTATGGTGGAAGGAGTGTGTTTCTAAGTGGTTCTTTCACACGCTGGTCTGAGCTTCTACCAATGTCACCAGTGGAAGGTTGCCCAACTGTATTTCAAGTTATTTATAACTTACCCCCCGGTTATCATCAGTTCAAGTTTTTTGTTGATGGAGAATGGCGGCACGATGAGCATCAACCTTATGTACCTGGAGAATATGGGATAGTCAACACTGTCTTCTTGGCTACGGATCCTAGCTACATACCTGTTATAACTCCAGAAATTGCTTCTGGAAATAACATGGATGTGGATAATGAGGCTTCTCGCCGTATGCAGGTCAGAGTGACAGATGGTACATTGGGTGAGGTGCTGCCAAGAATATCAGACACTGATTTACAGATTTCCCATCAGCGTATTTCTGCATTTCTGTCTACGCACACAGCTTACGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGATGTTGATTTGCCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAGTTTACATGGCTCCTCTATGGGACTTGTGCAAGGGGAAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTATCTTAATTTTAAGAGAGCTGGGGAATCATGGGTCCAACCTAACTGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAATGGACATGGAACTGCATTTTCAAGACGTTTTATCCATGCAGGGCCATACGATAATCTGAGGGATATTGCCTTGAAGGTCTTGCAAAAGGAGGTTTCAACAGTTCCCATTATCCATTCATCTTCTGAAGATGGTTCATTTCCACAGTTATTACATCTTGCTTCACTTTCTGGAATACTTAAATGCCTTTGTCGGTATTTTAGGCATTGCTCTAGTTCATTGCCTATGCTTCAACTTCCAATATGTGCAATACCTGTTGGTACGTGGGTGCCCAAAATTGGGGAATCAAATCGGCGGCCTCTAGCAATGTTGAGACCAAGCTCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTTAGTTCAATACCAATAGTTGATAATAATGACTCATTACTGGATATATATTGTCGGAGTGATATAATGGCTTTGGCAAAGGACAGAGCATATACGCATATTAATCTTGATGAAATGACTGTTCATCAGGCCTTGCAGTTGGGCCAGGACGCATATGGTCCATCCGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTACATTCTGATTCGCTGCATAAAGTGATGGAACGTCTGGCAAATCCAGGTGTCAGGCGACTTGTAATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTTCTTGGTTAG 1476 0.4295 MLNQSMDPARDGGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYNLPPGYHQFKFFVDGEWRHDEHQPYVPGEYGIVNTVFLATDPSYIPVITPEIASGNNMDVDNEASRRMQVRVTDGTLGEVLPRISDTDLQISHQRISAFLSTHTAYELLPESGKVVALDVDLPVKQAFHILHEQGVYMAPLWDLCKGKFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQNNGHGTAFSRRFIHAGPYDNLRDIALKVLQKEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCLCRYFRHCSSSLPMLQLPICAIPVGTWVPKIGESNRRPLAMLRPSSSLASALNLLVQAQVSSIPIVDNNDSLLDIYCRSDIMALAKDRAYTHINLDEMTVHQALQLGQDAYGPSELRSQRCQMCLHSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLG* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01585 491 Gene3D - 148 332 IPR046342 -
Rops11g01585 491 CDD E_set_AMPKbeta_like_N 22 100 - -
Rops11g01585 491 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Rops11g01585 491 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Rops11g01585 491 SMART cbs_1 441 490 IPR000644 -
Rops11g01585 491 SMART cbs_1 177 226 IPR000644 -
Rops11g01585 491 SMART cbs_1 359 407 IPR000644 -
Rops11g01585 491 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 152 489 - -
Rops11g01585 491 Gene3D - 339 491 IPR046342 -
Rops11g01585 491 SUPERFAMILY E set domains 21 102 IPR014756 -
Rops11g01585 491 Pfam CBS domain 444 490 IPR000644 -
Rops11g01585 491 Pfam CBS domain 357 404 IPR000644 -
Rops11g01585 491 Gene3D Immunoglobulins 21 108 IPR013783 -
Rops11g01585 491 SUPERFAMILY CBS-domain pair 356 490 IPR046342 -
Rops11g01585 491 SUPERFAMILY CBS-domain pair 157 328 IPR046342 -
Rops11g01585 491 Pfam Glycogen recognition site of AMP-activated protein kinase 21 100 IPR032640 -
Rops11g01585 491 ProSiteProfiles CBS domain profile. 355 412 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01585 Rops-Chr11 24194934 24204491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01585 30 132 Protein tyrosine phosphatase (PTP) family AT3G52180 28.972 6.95e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01585 - - gmx:100785692 887.1