Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01581 ATGGTTGATAACAATGGAGGTAGTTCCTCTAACGATGATGCTGGTATCAAGGAACAAGACCGGTTGCTTCCAATAGCCAATGTTGGTCGAATCATGAAGCAGATTTTGCCTCAGAATGCAAAAATCTCGAAGGAAGCAAAGGAAACAATGCAAGAATGTGTGTCTGAGTTCATAAGCTTTGTAACCAGCGAAGCTTCAGAGAAGTGCAGAAAGGAAAGGAGAAAGACCGTGAATGGTGATGATATTTGCTGGGCCCTGACAACGCTAGGCTTTGATGACTATGCAGAGTCAATGAGAAGTTTGAGAGATGGGGAAGGTGTTTCGGAAGAGGTGGACATAAATGTTCCACAAGATGTCAATGATGATGATGAGGACGAAGAGGTTGAAGAAGATGAGGATGAAGAGTCATTTGATTCAGGTCATGAATCTGAAGAAGATAATGATGTGCAACATTTTGAATTTGCATCTAGTGATGATGAAAGCGATGGTGATGATGATGATGACGACGGCGAGACAGAACCACCCAGTTCACCTTTTCAGTGA 543 0.4273 MVDNNGGSSSNDDAGIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALTTLGFDDYAESMRSLRDGEGVSEEVDINVPQDVNDDDEDEEVEEDEDEESFDSGHESEEDNDVQHFEFASSDDESDGDDDDDDGETEPPSSPFQ* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01581 180 MobiDBLite consensus disorder prediction 115 142 - -
Rops11g01581 180 Gene3D Histone, subunit A 11 172 IPR009072 GO:0046982
Rops11g01581 180 MobiDBLite consensus disorder prediction 101 180 - -
Rops11g01581 180 MobiDBLite consensus disorder prediction 158 173 - -
Rops11g01581 180 MobiDBLite consensus disorder prediction 143 157 - -
Rops11g01581 180 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops11g01581 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Rops11g01581 180 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Rops11g01581 180 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Rops11g01581 180 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Rops11g01581 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops11g01581 180 SUPERFAMILY Histone-fold 19 150 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01581 Rops-Chr11 24079984 24090588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01581 16 99 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.143 8.97e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops11g01581 CBFD_NFYB_HMF 1.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01581 K08065 - gmx:102663543 180.259