Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01577 ATGCATACCATGTTCAAAGCGTTTGTCTGCCACAATGGTTTTGGTATCACAAGAAAATCAACACCCACAAAACTTGACCCTCTGTTGCGGCACTTTCCGTTCCCATTTTCTCTCAGATACCTCAGCACGAGCACTTCAGAACCACCCTCATTTGCGGTATCCTACCTCATCAACAATTTTGGGTTCTCACGTGAATCCGCTCTCAAAGCTGCTTCCAAGCAGGCTCGTTTCAAGACCTCAAAAAAGCCCGATTCAGTTCTCACATTCTTCAGAAACCACGGTTTCCCTAACTCTGATATACGCAGCCTCATCAGAAGGGCACCCTGGCTCCTTTCATGCGATCCCGAGAAAAGGGTCTTGCCAAAGTTTCAGTTTTTACTCTCCAAAGGAGCTTCTGCTTCTGACATTGTTGGCATAGTGGCAGCTAACCCCAGATTACTGAAATTAACCTTGGAGAATCGTATAATACCAGCATATAAGTTGGTAACGAGATTCCTCCTATCTGAAAAAATGGCCCTTGCTTCTATAATTCATTGTCCGTCTTTGCTTAGTTGCGATTCTGTGGCCCTTAATGTCAAATTGTTGGTTGATAATGGTGTGGCAAGTTCCAGCATTTTAAGAATCCTTCGTTGTAACCCTAAAATTACCTGTGATAGTGACTTGGGGAAGACGGTGCAGGAATTGAAAAACATGGGGTTTGATCCTTCCAAATCACAGTTTGTTGATGCATTGATTGCCAAAAGATCTGCAAGCAAATCCAAGTGGAATGAGAAAATTGATACCTATAAGAGGTGGGGTTGGTCTGAAGAAACAATTTTGGAAGCATTTAGGAGGCAGCCAATCTGTATGTCAAGATCCAATGATAAAATCAATAGGGTGATGCAATTTTGGGTTAATCAGTTAGGTTGGGATTCTTCTTACCTTGTCAAGGGACCAGGGATTTTTGCACATAGTTTGGAGAAAAGGGTCATTCCAAGGGCTTCGGTTGTCCAATATCTTCTATCCAAAGGTTTGAGAAGCAAGGATGCAAGCTTGACTGCGCCATTTTATATGTCTGAGGAGATGTTCCTGCAAAAGTTTGTGAAATGTTTTGAAGAGGAGGAAACTTCTCGGCTATTGAAGTTATATTGGGGAAAAATGAATGTTGAAGATAAGGGAACACAAGGGAAATATGACATGTCATGTTCATAA 1191 0.4207 MHTMFKAFVCHNGFGITRKSTPTKLDPLLRHFPFPFSLRYLSTSTSEPPSFAVSYLINNFGFSRESALKAASKQARFKTSKKPDSVLTFFRNHGFPNSDIRSLIRRAPWLLSCDPEKRVLPKFQFLLSKGASASDIVGIVAANPRLLKLTLENRIIPAYKLVTRFLLSEKMALASIIHCPSLLSCDSVALNVKLLVDNGVASSSILRILRCNPKITCDSDLGKTVQELKNMGFDPSKSQFVDALIAKRSASKSKWNEKIDTYKRWGWSEETILEAFRRQPICMSRSNDKINRVMQFWVNQLGWDSSYLVKGPGIFAHSLEKRVIPRASVVQYLLSKGLRSKDASLTAPFYMSEEMFLQKFVKCFEEEETSRLLKLYWGKMNVEDKGTQGKYDMSCS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01577 396 Pfam mTERF 87 287 IPR003690 GO:0003690|GO:0006355
Rops11g01577 396 Pfam mTERF 250 356 IPR003690 GO:0003690|GO:0006355
Rops11g01577 396 FunFam Mitochondrial transcription termination factor-like 151 368 - -
Rops11g01577 396 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Rops11g01577 396 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Rops11g01577 396 SMART mt_12 206 234 IPR003690 GO:0003690|GO:0006355
Rops11g01577 396 SMART mt_12 174 201 IPR003690 GO:0003690|GO:0006355
Rops11g01577 396 SMART mt_12 137 168 IPR003690 GO:0003690|GO:0006355
Rops11g01577 396 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Rops11g01577 396 Gene3D Transcription termination factor 3, mitochondrial 178 368 IPR038538 -
Rops11g01577 396 PANTHER CGI-12 PROTEIN-RELATED 49 365 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01577 Rops-Chr11 24024483 24026362 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops11g01577 mTERF 2.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01577 K15032 - mtr:25488156 385.956