Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01575 ATGTTCAAAGCGTTTCTCTGCCAGAATGGTTTTGGTATCACAAGAAAATCAACAACCACGAAACTTTACTCTCTTTCATGGCACTTGCGGTTCCCATTCTCTCTCAAATACCTCAGCACAAGCACCTCAGATTCATACCCATTCGCGGTGTCGTACCTCATCGATAATTTTGGGTTCTCTGTAGAATCCGCTCTCAAAGCTTCTTCCAAGGAGGTTCGTTTCAAGACCTCAAATAAGCCCGATTCAGTTCTCACCTTTTTCAGAAACCAAGGTTTCCCCGACTCAGATATACGCAACATCATCAGAAGGGAACCCTGGCTCCTTTCATGCAATCCTGACAAAAGGGTCTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGCTTCTCTGCTTCTGACATTGTTCGCATCCTGGTAAGGAACCCCAGATTCGTGAAATTAAGCTTGGAGAATAGTCTAATCCCGAAATATAAATTGTTAAATAAATTCCTCCAATCTGAAAAAAGGACCCTTCCTGCTATAATTTGTTGTCCTTCTTTGCTTTCTTGTGAAACTATGGCCCCTAATGTCAAATTGTTGGTTGATAATGGTGTGGCCAGTACCAACATTTTTAGAATACTTCGTGTAAGGCCTTATATTATCTGCTCTAGTGACTTGGGGAAGACGGTGCAGGAATTGAAAAACCTGGGATTTGATCCTTCCAAATCATACTTTGGTGATGCATTGCTGGCCAAAAGATGCTTAGGCAAATCCCAGTGGAATGAGAAAATTGATACCTATAAGAGCTGGGGTTGGTCTGAAGAAACAATTTTGGAAGCATTTAGGACGCAGCCAAACTGTATGTTAAGATCCTGTGATAAAATCAATAGGGTCATGCGATTTTGGGTTAATCAGTTAGGTTGGGATTCTTCTTACCTTGTCAAGGGGCCTGGGATTTTTGGATATAGTTTGGAGAAAAGGGTCATTCCTAGAGCTTTGGTTGTCCAATATCTTCTATCCAAAGGTTTGAGAAGAAAGAGTGCAAGCTTGATTACACCATTTTTTATATCGGAGGATATGTTCCTGCAAAAGTTTGTGAAATGTTTTGGAAAGGAGGAAACTTCTCAGCTACTGAAGTTATATCGGGAAAAAATGAATGTTGAAGATAAGGGAACACAGGGGAACCGTGAGATGCCACTTTCATAA 1182 0.4086 MFKAFLCQNGFGITRKSTTTKLYSLSWHLRFPFSLKYLSTSTSDSYPFAVSYLIDNFGFSVESALKASSKEVRFKTSNKPDSVLTFFRNQGFPDSDIRNIIRREPWLLSCNPDKRVLPKFQFLLSKGFSASDIVRILVRNPRFVKLSLENSLIPKYKLLNKFLQSEKRTLPAIICCPSLLSCETMAPNVKLLVDNGVASTNIFRILRVRPYIICSSDLGKTVQELKNLGFDPSKSYFGDALLAKRCLGKSQWNEKIDTYKSWGWSEETILEAFRTQPNCMLRSCDKINRVMRFWVNQLGWDSSYLVKGPGIFGYSLEKRVIPRALVVQYLLSKGLRRKSASLITPFFISEDMFLQKFVKCFGKEETSQLLKLYREKMNVEDKGTQGNREMPLS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01575 393 SMART mt_12 203 231 IPR003690 GO:0003690|GO:0006355
Rops11g01575 393 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Rops11g01575 393 SMART mt_12 170 198 IPR003690 GO:0003690|GO:0006355
Rops11g01575 393 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Rops11g01575 393 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Rops11g01575 393 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Rops11g01575 393 FunFam Mitochondrial transcription termination factor-like 148 364 - -
Rops11g01575 393 Pfam mTERF 84 231 IPR003690 GO:0003690|GO:0006355
Rops11g01575 393 Pfam mTERF 250 353 IPR003690 GO:0003690|GO:0006355
Rops11g01575 393 PANTHER CGI-12 PROTEIN-RELATED 48 363 IPR003690 GO:0003690|GO:0006355
Rops11g01575 393 Gene3D Transcription termination factor 3, mitochondrial 172 365 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01575 Rops-Chr11 24007287 24008753 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops11g01575 mTERF 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01575 K15032 - mtr:25488156 376.326