Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01572 ATGTTGGTCAGTTCTCAGCGCTACAGAGCCCTGCTCCACCTCAATCCCCAAAAGTTAAACCCTCTTTTGCCATGGCCATTGTTTTCTCTGAAATTGAAATTCCGCACAAGCACTTCAGAATCAGAATCAGACTCTTTTACTGTTTCCTACCTCATCAACAACGTTGGGTTTTCCCCGGAATCAGCTCTAAAAGCTTCAAAACGACTTCGTCTCAAGACCCCAGAGCAACCTGATTCGGTTTTCACCTTCTTCAGAAACCGTGGCTTTTCAGATCCTAACATACGCGGAATCGTCAAAAAGGAACCGTGGCTACTTTCATCGAGCCTTCAAAATTCGATTTTGCCAAAGTTTGAATTTTTTCTCTCCAAAGGTGCTTCTGCCTCTGATATTGTTCGCATGTTGACGGCGAACCCCAGAATCCTACAAAGAAGCTTGGAGAAGCGTATAATCCCTCTTTATAAATTGTTAAATAGGTTCTTGAAATCTGACCAGAACTCCATTGCTTGCTTAATTCGTAACTCGATTCCCTTTTCTTATAACCCAACCATGGCTAATATCAAGTTGATGATTGATTATGGAGTTTGTGATTCCAGCATGGCCAGATTGTTTCTCACGCGGCCATCTATCCTTGGCTCACGTAACTTGATGAAGTCATTGGAGGAAGTAAAGGGTTTGGGTTTTGATCCTTCAAAATCCACTTTTGGGGTGGCTTTGGTAGCCAGGAAAGGTATCAGCAAAAGACGGTGGAATGAGAAAGTTGTTGCCTTTAGGAAATGGGGCTGGTCTGATGAGACCATTCTTCGAGCATTTAGGAGGCAGCCTGGTTTAATGCTGGTATCTTGTGATAAGATTAATTTGGTGATGAGTTTTTGGGTCAATCAGATGGGTTGGAATTCTTTGGCACTTGTCAAAGCGCCAGATATTTTTGGGTATAGTTTACAGAAAAGGACCATTCCAAGAGCCGCAGTTCTGCAATTTCTTCTGGAGAAAGGATTGCGAAAAAAGGATGCAAGCTTAGTTATGCCATTTACGTTGCCTGATAAGTTGTTTCTGAGCAAATTTGTTGTCTGTTTTAAGGAAGAGTCTGCTGATCTACTAAAGCTGTATGAGGAAAAAATGAAGCTTGCATACACAAAGGAGAACACTGGCATGCCAGTCACCAAATATGTAACTTCTTAA 1179 0.4207 MLVSSQRYRALLHLNPQKLNPLLPWPLFSLKLKFRTSTSESESDSFTVSYLINNVGFSPESALKASKRLRLKTPEQPDSVFTFFRNRGFSDPNIRGIVKKEPWLLSSSLQNSILPKFEFFLSKGASASDIVRMLTANPRILQRSLEKRIIPLYKLLNRFLKSDQNSIACLIRNSIPFSYNPTMANIKLMIDYGVCDSSMARLFLTRPSILGSRNLMKSLEEVKGLGFDPSKSTFGVALVARKGISKRRWNEKVVAFRKWGWSDETILRAFRRQPGLMLVSCDKINLVMSFWVNQMGWNSLALVKAPDIFGYSLQKRTIPRAAVLQFLLEKGLRKKDASLVMPFTLPDKLFLSKFVVCFKEESADLLKLYEEKMKLAYTKENTGMPVTKYVTS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01572 392 PANTHER CGI-12 PROTEIN-RELATED 42 361 IPR003690 GO:0003690|GO:0006355
Rops11g01572 392 FunFam Mitochondrial transcription termination factor-like 145 362 - -
Rops11g01572 392 Gene3D Transcription termination factor 3, mitochondrial 52 178 IPR038538 -
Rops11g01572 392 Gene3D Transcription termination factor 3, mitochondrial 179 368 IPR038538 -
Rops11g01572 392 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Rops11g01572 392 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Rops11g01572 392 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Rops11g01572 392 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Rops11g01572 392 SMART mt_12 200 228 IPR003690 GO:0003690|GO:0006355
Rops11g01572 392 Pfam mTERF 83 212 IPR003690 GO:0003690|GO:0006355
Rops11g01572 392 Pfam mTERF 244 350 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01572 Rops-Chr11 23984894 23986072 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops11g01572 mTERF 3.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01572 K15032 - mtr:25488156 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04862 2 87847683 87854862 Rops11g01572 11 23984894 23986072 PCT