Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01571 ATGTGGATTGAGGTCGCGAAAGGTGAGGGAGTCGCCAGAATAAGTATTGGTGAGGGTCGTGGTGGAGAAGGAGAAAGTGCTTTGGAAAGGAATGAGATGAGGGAAAGGTTGGGTTCCCAGCGCTACAGAGCCCTGCTCCACCTCAAGCCCCAAAAATTAAACCCTCTTTTGCCATTGCCATTGTTTTCTCTGAAATTGAAATTTTGCACAAGCACTTCAGACTCTGAATCAGAATCAGACTCTTTTACTGTTTCCTACCTCATCAACAATGTTGGGTTTTCCCCGGAGTCAGCTCTAAAAGCTTCAAAACGACTTCGTCTCAAGACCCCAGAGAAACCTGATTTGGTTTTCACCTTCTTCAGAAACCGTGGCTTTTCAGATTCTAACATACGCGAAATAGTAAAAAAGGAACCGTGGCTACTTTCATCGAACCCTCAAAATTCGATTTTGCCAAAGTTTGAATTTTTTCTCTCCAAAGGTGCTTCTGCCTCTGACATTGTTCGCATGTTGACAGCGAACCCCAGAATCCTACAAAGAAGCTTGGAGAAGCGTATAATCCCTCTTTATGAATTGTTAAAGAGGTTCTTGAAATCTGACAAGAACACTACTGCTTGCTTAATTCGCTGCTCGATTCCCTTGTCTTATAACCTGACAATGAATAATATCAAGTTGATGATTGATTATGGAGTTTGTGATTTAAGCATGGCCAGATTGCTTCTCACGCGACCATCTATACTTGGCTCGGATAACTTGATAAAGTCATTGGAGGAAGTGAAGGGTTTGGGTTTTGATCCTTCAAAATCCACTTTTGGGGTGGCTTTGGTAGCCAAGAAAGGTATCAGCAAAAGACGGTGGAATGAGAAAGTTCTTGCCTTTAAGAAGTGGGGTTGGTCTGATGAAAACATTCTTGCAGCATTTAAAAGGTTGCCTCAGTGTATGTTAGCATCCATTGATAAAATAAATTTAGTGATGAGTTTTTGGGTCAATCAGTTGGGTTGGGATGCTCTGGCAATTGTCAAAGGACCAAGGATTATTGGGTTTAGTTTGGAGAGAAGGATCATTCCAAGGGCCTCAGTTCTGCAATTTCTTCTGAACAAAGGTTTGCGAAAAAAGACTGCTAGCTTAATTAGTCCATTTATGATGCGTGAGGACTTGTTCCTAAAGAACTTTATAAAACGTTTTAAGGAGGAGTCTTCTGATCTATTTAAGCTGTATGAAGAAAAACTGAATCTTGCATCCACCAGGGAGAACACTGGCATGTCCTTCACCAAATATGTAACTTCTTAG 1287 0.4141 MWIEVAKGEGVARISIGEGRGGEGESALERNEMRERLGSQRYRALLHLKPQKLNPLLPLPLFSLKLKFCTSTSDSESESDSFTVSYLINNVGFSPESALKASKRLRLKTPEKPDLVFTFFRNRGFSDSNIREIVKKEPWLLSSNPQNSILPKFEFFLSKGASASDIVRMLTANPRILQRSLEKRIIPLYELLKRFLKSDKNTTACLIRCSIPLSYNLTMNNIKLMIDYGVCDLSMARLLLTRPSILGSDNLIKSLEEVKGLGFDPSKSTFGVALVAKKGISKRRWNEKVLAFKKWGWSDENILAAFKRLPQCMLASIDKINLVMSFWVNQLGWDALAIVKGPRIIGFSLERRIIPRASVLQFLLNKGLRKKTASLISPFMMREDLFLKNFIKRFKEESSDLFKLYEEKLNLASTRENTGMSFTKYVTS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01571 428 SMART mt_12 303 334 IPR003690 GO:0003690|GO:0006355
Rops11g01571 428 SMART mt_12 236 264 IPR003690 GO:0003690|GO:0006355
Rops11g01571 428 SMART mt_12 167 198 IPR003690 GO:0003690|GO:0006355
Rops11g01571 428 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Rops11g01571 428 SMART mt_12 335 369 IPR003690 GO:0003690|GO:0006355
Rops11g01571 428 FunFam Mitochondrial transcription termination factor-like 181 398 - -
Rops11g01571 428 Pfam mTERF 119 247 IPR003690 GO:0003690|GO:0006355
Rops11g01571 428 Pfam mTERF 280 386 IPR003690 GO:0003690|GO:0006355
Rops11g01571 428 Gene3D Transcription termination factor 3, mitochondrial 215 403 IPR038538 -
Rops11g01571 428 Gene3D Transcription termination factor 3, mitochondrial 87 214 IPR038538 -
Rops11g01571 428 PANTHER CGI-12 PROTEIN-RELATED 78 396 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01571 Rops-Chr11 23974261 23977192 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops11g01571 mTERF 2.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01571 K15032 - mtr:25488156 394.045