Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01569 ATGTTGAGTTCCCAACGCTGCTTCAAACCCCTTCTTCTCCATCTAAAGGGAATCATAGGAAAACACCCTCAAACCCCGAAAGTGAATCCTTTTGTGTCGTCAACCTTCTCTTCAAAATACTACTGCTCAATCACTTCAGATCAAATCCCATTCACGGTTTCGTATCTCACAACCAATTGCGGGTTCTCACCAGAAAGTGCTCGCTGGGCTTCCAGACTCGTTCATTTCGACACCGCCGAAAAGCCCGACTTAGTCATCGCCTTCTTCAGAGACCACGGTTTCTCTGACTCTGAGATGAAAAGTATCATTAGAACTGCCCCCAATGTGCTCACATGCAATCTCCACAAAAGGGTTTTGCCAAAGTTTGAATTTTTAAGCTCCAAAGGTGCTTCAAGCTCTGACATTGTGCGGATCGTGCACAGGAGCCCCAGAATCCTGTATTCAAGCCTCAAGAATAGCATAATCCCTACCTATGAATTGGTGAGAAGGTTCCTTCCTTCTGATGAGAAAACCATTGATCGTGTTCTTCTTTGTAAACATTTCTTTGGTAGCGATCTTGTGACACGGAATGTGAGGTTGTTGCTTGATGAAGGATTCACAGACTCAAACATCACCTTTTTGTTACTGAAAAGGCCATCTATAATATTGACTTATGACATGAGGAAGGCATTGGATGAGGTTAAGGAAATGGGATTTGAACCTTCTACATTAAGGTTTGCTATAGCATTGGTAGCCAAAAGGGCAGTTTCTCAATCCCGGTGGGATGAGAAAGTTGAGGTCTTTAAGAGATGGGGTTGGTCTGAAGAAATGGTTCTTGATGCTTTTAAGAAACGGCCCTTATGTATGTTAGTATCCAAGGATAAAATTGATGAGGTTATGAGATTTTGGGTCAATCAGTTGGGTTGGGACTCTTTGGCCCTTGTAGAAAGGTCAGAGGTTTTTTCATATAGTTTGGAGAAAAGGATCATTCCGAGGGCTTTTGTCATCCAGTATTTAATAGCAAAAGGTTTGAGAGAAAATAATATCAAATTGGCTACCCCTTTTGCTCTTAATGAAAAGTTGTTTCTTGAAAAAATCTGTGGGGAACAATTCACAGATGTTCGAAGAAGTTTCATGCAGATCATTAGATTGATGACTGATAGTACAGGTTCTGAGCACTCAGGAGATCCTACTCCTCGTGCACCACCTTTATTCCCGGTGGAAGAGGATTTTATTGGGAAGAAAATTATGGAGTTGCTGGAGCTGCTGTCGGTAATAGTTTGTAGGCTGTGGGCTCATATTGAAGCCAATATCGTGGAGCTTACCAAAGCTCTCTAG 1317 0.4222 MLSSQRCFKPLLLHLKGIIGKHPQTPKVNPFVSSTFSSKYYCSITSDQIPFTVSYLTTNCGFSPESARWASRLVHFDTAEKPDLVIAFFRDHGFSDSEMKSIIRTAPNVLTCNLHKRVLPKFEFLSSKGASSSDIVRIVHRSPRILYSSLKNSIIPTYELVRRFLPSDEKTIDRVLLCKHFFGSDLVTRNVRLLLDEGFTDSNITFLLLKRPSIILTYDMRKALDEVKEMGFEPSTLRFAIALVAKRAVSQSRWDEKVEVFKRWGWSEEMVLDAFKKRPLCMLVSKDKIDEVMRFWVNQLGWDSLALVERSEVFSYSLEKRIIPRAFVIQYLIAKGLRENNIKLATPFALNEKLFLEKICGEQFTDVRRSFMQIIRLMTDSTGSEHSGDPTPRAPPLFPVEEDFIGKKIMELLELLSVIVCRLWAHIEANIVELTKAL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01569 438 Gene3D Transcription termination factor 3, mitochondrial 167 369 IPR038538 -
Rops11g01569 438 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Rops11g01569 438 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Rops11g01569 438 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Rops11g01569 438 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Rops11g01569 438 Pfam mTERF 188 355 IPR003690 GO:0003690|GO:0006355
Rops11g01569 438 Pfam mTERF 87 290 IPR003690 GO:0003690|GO:0006355
Rops11g01569 438 PANTHER CGI-12 PROTEIN-RELATED 50 360 IPR003690 GO:0003690|GO:0006355
Rops11g01569 438 FunFam Mitochondrial transcription termination factor-like 150 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01569 Rops-Chr11 23959420 23968405 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops11g01569 mTERF 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01569 K15032 - gmx:102666739 397.512