Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01560 ATGGATGGACAAAATGCAGAAGACACTAAACAGAGCACTGCTGATATGACAGCTTTTGTACAAAATCTTCTTCAGCAGATGCAAAGCAGGTTCCAGACAATGTCAAACTCCATCATTTCAAAGATTGATGAGATGGGCAACAGGATAGAGGAATTGGAGGAGAACATCAATGAACTTCGAGCAGAAATGGGAGTAGAGAGTTCACCATCTCCTGCATCTCAACCTGAGTCTTCTCCACAACCCTGGTCTGCCTTCTTCGCCTCTTCAGGTTTTGTAGATCTTTGTGAAAGAGTTTTATATCGCACCAAAAAGATGCAGAACGAGGAAGGACAGATCACAGAGCTTTACATTCCTAGGAAGTGCTCTGCAACAAACAGATTGATTACTGCCAAGGACCATGCTTCAGTTCAGATTAACATTGGCCATTTGGATGAGAATGGCATCTACAATGGCCATTTTTCCACCTTTGCCCTCTGTGGCTTCATTCGTGCACAGGGTGATGCTGACAGTGCACTAGATCGCCTGTGGCAGAAGAAGAAAACTGAGCTTAAGCAACAGTAG 561 0.4421 MDGQNAEDTKQSTADMTAFVQNLLQQMQSRFQTMSNSIISKIDEMGNRIEELEENINELRAEMGVESSPSPASQPESSPQPWSAFFASSGFVDLCERVLYRTKKMQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDENGIYNGHFSTFALCGFIRAQGDADSALDRLWQKKKTELKQQ* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01560 186 PANTHER 40S RIBOSOMAL PROTEIN S21 105 184 IPR001931 GO:0003735|GO:0005840|GO:0006412
Rops11g01560 186 Gene3D - 11 56 - -
Rops11g01560 186 Gene3D - 101 185 IPR038579 -
Rops11g01560 186 Pfam Ribosomal protein S21e 105 180 IPR001931 GO:0003735|GO:0005840|GO:0006412
Rops11g01560 186 ProSitePatterns Ribosomal protein S21e signature. 115 123 IPR018279 GO:0003735|GO:0005840|GO:0006412
Rops11g01560 186 FunFam Heat shock factor binding protein 11 57 - -
Rops11g01560 186 Coils Coil 35 62 - -
Rops11g01560 186 FunFam 40S ribosomal protein S21 105 185 - -
Rops11g01560 186 Pfam Heat shock factor binding protein 1 15 62 IPR009643 GO:0003714
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01560 105 185 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 83.951 1.05e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01560 K02971 - gmx:100817753 166.392