Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01554 ATGTCTTCTCCTTCCTGGCTTACCTCACCCTCATGTTCCCCTTTGGCCATAGATTCATCTTCTTCTTCTGATCAACTCATAGTTCAGTGGTTAAGGTTTATCTTGCTATCTCCATGTCCTCAAAGAGTTCTTCTTTCTGCTATCGATATCTTCTTCCTGGTCACCCTTCTAGCCTTTGCAGCTCACAAGCTCTATTCTAGATTCAGTTCCAATGCCAACTCTAGCTCCTCCATCACTAAACCCCTTTTGCAGGAGAAGGATTCTGACTATAAAGTTACCTTGTGGTTCAAACTACCCTTGTTGGTAACCGCCCTTTTGGCCATCGCTTACACGGTTCTAGGCGTATTAGCTTTCACTCAAAGCAACCTTGCATCATGGAAGCTGATAGAGGCACTGTTTCGGTTGTCTCAAGCAATAGTCAACATAGTGATAGTGATTCTATTGGTACATGAGAAAAAGTTCAAAGCTACTAAGCACCCTTTGTCACTAAGAATCTATTGGATAGCAAACTTGGTGATTGCTTGTTTGTTTGCTGCTTCAGCCATTGTTCGTATGGTAACTATTGATGAAGCGAGGTTGGGGCTTAGTTTGAGAATAGATGACATATTCTCATTGGTTAATCTTCCATTATCTATGTTCTTTTTTGTAATAGCCATTAAACGATCATCAGGGATTCATGTAATTAGAATATCTGATGTAGTAACAACACATCGGTGGCTTTCCACAGATAGGACTTTGAGTCCTTATGCTCAAGCTAATTTTTTCTCCAAAACAGTGTGGCTTTGGATGAACCCACTGCTCAATAGAGGGTACCAAACACCCCTTAAACTGGAAGATGTGCCTTCACTTCCTCCTGAATTCCGAGCAGAAAAGATGTCAGAACTATTTCAGAGTAATTGGCCAAAGCCAGAGGAAAACAGCAAGCACCCAGTTGGAGTCACCTTATTTAGATGCTTTTGGAAACACATAGTTTTCACTGGCTTCCTTGCAGTCATTAGACTTGCAGTTATGTACATTGGTCCAATGCTTATCCAAAGTTTTGTTGACTTCACCTCAAGGAAAGACAGCACTACCTCTGAAGGCCTTGTTTTGATACTGATCCTTTTTGCAGCAAAATCAGTCGAAGTCCTAAGTGTTCACCAATTCAACTTCCACTCTCAGAAACTAGGCATGCTAATTCGTTCCAGCATCATTACCTCTGTGTACAAGAAGGGTTTGAGGTTGTCAAGTTCTTCAAGGCAAACTCATGGTACTGGCCAAATTGTGAATCACATGGCTGTTGATGCTCAGCAACTCTCAGATTTGATGTTACAGCTTCACCCTATATGGTTGATGCCACTACAAGTTACTGCTGCATTGGCCCTTATCTATAACTATGTTGGTTTGTCTGTAATTGCAGCCCTTTTGGGAACTAGCATAGTGTTTGTCTTCACTTTCATTCGCTCAAAGAGGACCAACAGTTTCCAGTTTCGTATAATGATGAGCCGGGATTCAAGGATGAAGGCAACAAATGAGTTGCTTAACAACATGCGTGTCATTAAGTTCCAAGCATGGGAAGAGTATTTTGGTGACAAAATTAAACAGTTTCGTGAAGCTGAGCATGGTTGGATCGGAAAGTTCTTGTACTATTTTGCTGTTAACATGGGAGTTCTGACCACTGCTCCCCTCATGGTAACTGTTCTTACCTTTGGAACAGCAATTTTTATGGGAATTCCTTTGAATGCTGCCACCGTGTTCACAATAACTTCAGTGATCAAGATACTGCAAGAGCCTGTGAGGACCTTCCCTCAGGCTCTTATCTTGATTTCTCAAGCAATAGTCTCTCTTGGCAGGTTGGATGAGTTCATGAGGAGTAAGGAAACGGATGAGACTTCAGTGCAGAGAGAGGACAACTGTGATAGTGACATAGCTGTGGATATAAAAGATGGGAAATTCTCTTGGGATGATGGGGATGGGAATGAGGCTCTGAAAGTTGAAGAGCTGGTAATTAAGAAAGGGGACCATGCTGCAGTTGTTGGAACTGTTGGATCAGGCAAGTCTTCATTACTGGCTTCTGTGTTAGGGGAAATGTTCAAGATCTCTGGAAAGGTCAGAGTTTGTGGGACTGTCGCCTATGTAGCACAGACATCATGGATTCAGAATGCAACCATCCAAGAAAACGTATTGTTTGGTTTACCAATGAACAGGGAGAAGTACAGGGAAGTTATAAGAGTGTGCTGCTTGGAAAAGGATCTTGAAATGATGGAACATGGAGACCAAACTGAGATTGGAGAACGAGGAATTAACCTCAGTGGTGGCCAGAAGCAACGTGTACAACTTGCTAGAGCCGTATACCAAGACCGTGACATCTATCTTCTTGATGATGTTTTCAGTGCTGTTGATGCCCAAACAGGATCATTTATTTTTCAGGAATGTATCATGGGAGCTCTCAAAGATAAGACCATTTTACTTGTAACCCATCAAGTTGACTTCCTGCATAACGTGGACTCTATAATGGTGATGCGAGAAGGGAGAGTTGTGCAAAGCGGAAAGTATGATGAACTTCTCAAAGCTGGTTTGGATTTTGGTGCACTTGTGACAGCACATGAATCCTCTCTAGAGATTGCAGAAACAAGTGACAAAGATGGTGATGATTCTGGTCAGTCTCCAAAACTGGCTCGTATCCCTTCAAAAGAAAAGGAAAGCACAGGTGAAAAGCAGCCTCAAGATCAAACTAAGTCTGATAAGGTCGATGGAAAACTCATTGAAGATGAGGAAAGAGAAACTGGCCGTGTGGACCTTAAAGTATATAAACATTATTTCACTGAAGCATTTGGATGGTGGGGAATAGCACTCATGTTCGCAATGTCTCTAGCATGGATTATATCATTTTTGGCTGGTGACTACTGGCTAGCAATTGGAACTTCAGAAGATTCTGGCATTCCCTCTTTTACATTCATTATTGTCTATGCTACCATAGCAGCTCTTGTATGTGTAGTGGTGATGTTCAGAGCAATCTTATTTACATATTGGGGTCTAAAGACATCTCAAAGCTTCTTCAGTGGAATGCTTCAAAGTATCCTGCATGCACCAATGTCATTCTTTGACACCACTCCTTCTGGCAGAATTTTGAGTCGTGTATCCACTGATTTACTTTGGGTTGATATATCAATTCCAATGTTAGTAAGCTTTGTAACGGTAGCATACTTCTCATTAGTCAGCATCCTCATTGTCACATGCCAAAATGCTTGGGAGACGGTTTTCCTCTTAATTCCACTGTTTTGGCTAAATAACTGGTATCGGAAATATTACCTTGCATCTTCTCGGGAATTGACTCGCCTTGATTCTATCACAAAAGCTCCTGTAATTCACCACTTTTCAGAGACCATTTCTGGTGTTATGACAATCCGTGGCTTCAGAAAGCAAAGTGCGTTTTATCAGGAAAATATTGACAGGGTCAATGCAAGTCTGAGAATGGATTTCCACAACAATGGTGCCAATGAATGGCTGGGTTATCGCCTGGACTTTACTGGAGTGGTTTTCCTTTGTCTTGCCACCATTTTCATGATCTTTTTGCCAAGTGCTATTGTTAGGCCAGAATATGTTGGTTTGTCTCTATCCTATGGCCTGGCTCTCAGTGGTCTCTTGTCATTTACCATAACTATGACTTGCTCTGTCGAGAACAAAATGGTTTCAGTTGAGAGAATAAAGCAGTTTACCAACCTTCCATCAGAAGCTCCATGGAAAATCCCTGATAGGTCTCCTCCTCAGAATTGGCCCACTCATGGCAATGTCGAGTTAAATAATTTGCAGGTTCGGTATCGGTCAAATACTCCTCTAGTTCTTAAGGGAATCTCTCTCACTATTCAAGGAGGAGAAAAAATTGGTGTTGTTGGTCGTACAGGGAGTGGGAAATCAACCCTCATTCAGGTGCTATTTAGGTTGATTGAACCTTCAGCAGGGAAAATAATAATTGATGGGATCAACATTTGCTCTATTGGCCTTCATGATTTGAGGTCTAGATTTGGAATTATTCCACAAGATCCTGTCCTCTTTCAAGGAACTGTAAGAAGCAACATAGACCCCCTTGGATTGTATTCAGAAGAAGAAATTTGGAAGAGCCTTGAACGCTGCCAACTGAAAGATGTGGTGGCTGCAAAGCCCGAGAAACTTGAGGCTTCAGTGGTTGATGGTGGAGACAATTGGAGTGTGGGGCAAAGGCAGCTACTCTGCTTGGGAAGGATCATGCTAAAACGCAGCAAAATACTATTCATGGATGAGGCAACAGCATCTGTTGATTCACAAACTGATGCTGTAGTACAAAAGATCATCAGGGAGGACTTTGCAGACCGTACAATTATCAGTATTGCTCATAGAATACCAACTGTCATGGATTGTGACAGGGTTTTGGTCATAGATGCAGGCTTTGCAAAGGAATTTGACAAGCCATCACGTTTGCTAGAAAGGCCTACACTTTTTGGAGCATTGGTTAAGGAGTACTCTAATAGATCAGCTTAA 4497 0.4196 MSSPSWLTSPSCSPLAIDSSSSSDQLIVQWLRFILLSPCPQRVLLSAIDIFFLVTLLAFAAHKLYSRFSSNANSSSSITKPLLQEKDSDYKVTLWFKLPLLVTALLAIAYTVLGVLAFTQSNLASWKLIEALFRLSQAIVNIVIVILLVHEKKFKATKHPLSLRIYWIANLVIACLFAASAIVRMVTIDEARLGLSLRIDDIFSLVNLPLSMFFFVIAIKRSSGIHVIRISDVVTTHRWLSTDRTLSPYAQANFFSKTVWLWMNPLLNRGYQTPLKLEDVPSLPPEFRAEKMSELFQSNWPKPEENSKHPVGVTLFRCFWKHIVFTGFLAVIRLAVMYIGPMLIQSFVDFTSRKDSTTSEGLVLILILFAAKSVEVLSVHQFNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQTHGTGQIVNHMAVDAQQLSDLMLQLHPIWLMPLQVTAALALIYNYVGLSVIAALLGTSIVFVFTFIRSKRTNSFQFRIMMSRDSRMKATNELLNNMRVIKFQAWEEYFGDKIKQFREAEHGWIGKFLYYFAVNMGVLTTAPLMVTVLTFGTAIFMGIPLNAATVFTITSVIKILQEPVRTFPQALILISQAIVSLGRLDEFMRSKETDETSVQREDNCDSDIAVDIKDGKFSWDDGDGNEALKVEELVIKKGDHAAVVGTVGSGKSSLLASVLGEMFKISGKVRVCGTVAYVAQTSWIQNATIQENVLFGLPMNREKYREVIRVCCLEKDLEMMEHGDQTEIGERGINLSGGQKQRVQLARAVYQDRDIYLLDDVFSAVDAQTGSFIFQECIMGALKDKTILLVTHQVDFLHNVDSIMVMREGRVVQSGKYDELLKAGLDFGALVTAHESSLEIAETSDKDGDDSGQSPKLARIPSKEKESTGEKQPQDQTKSDKVDGKLIEDEERETGRVDLKVYKHYFTEAFGWWGIALMFAMSLAWIISFLAGDYWLAIGTSEDSGIPSFTFIIVYATIAALVCVVVMFRAILFTYWGLKTSQSFFSGMLQSILHAPMSFFDTTPSGRILSRVSTDLLWVDISIPMLVSFVTVAYFSLVSILIVTCQNAWETVFLLIPLFWLNNWYRKYYLASSRELTRLDSITKAPVIHHFSETISGVMTIRGFRKQSAFYQENIDRVNASLRMDFHNNGANEWLGYRLDFTGVVFLCLATIFMIFLPSAIVRPEYVGLSLSYGLALSGLLSFTITMTCSVENKMVSVERIKQFTNLPSEAPWKIPDRSPPQNWPTHGNVELNNLQVRYRSNTPLVLKGISLTIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINICSIGLHDLRSRFGIIPQDPVLFQGTVRSNIDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVVQKIIREDFADRTIISIAHRIPTVMDCDRVLVIDAGFAKEFDKPSRLLERPTLFGALVKEYSNRSA* 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01554 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 324 604 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g01554 1498 FunFam ABC transporter C family member 3 1241 1492 - -
Rops11g01554 1498 Gene3D - 633 864 IPR027417 -
Rops11g01554 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 858 IPR027417 -
Rops11g01554 1498 Gene3D - 1242 1490 IPR027417 -
Rops11g01554 1498 FunFam ABC transporter C family member 5 906 1239 - -
Rops11g01554 1498 Pfam ABC transporter 661 789 IPR003439 GO:0005524
Rops11g01554 1498 CDD ABC_6TM_ABCC_D2 939 1233 IPR044726 GO:0140359
Rops11g01554 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1248 1491 IPR027417 -
Rops11g01554 1498 Pfam ABC transporter 1275 1423 IPR003439 GO:0005524
Rops11g01554 1498 SMART AAA_5 665 846 IPR003593 GO:0016887
Rops11g01554 1498 SMART AAA_5 1284 1468 IPR003593 GO:0016887
Rops11g01554 1498 Gene3D ABC transporter type 1, transmembrane domain 313 622 IPR036640 GO:0005524|GO:0016020
Rops11g01554 1498 Gene3D ABC transporter type 1, transmembrane domain 906 1239 IPR036640 GO:0005524|GO:0016020
Rops11g01554 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1258 1492 IPR003439 GO:0005524
Rops11g01554 1498 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 249 1494 - -
Rops11g01554 1498 ProSitePatterns ABC transporters family signature. 763 777 IPR017871 GO:0005524|GO:0016887
Rops11g01554 1498 SUPERFAMILY ABC transporter transmembrane region 315 622 IPR036640 GO:0005524|GO:0016020
Rops11g01554 1498 CDD ABC_6TM_ABCC_D1 325 612 IPR044746 GO:0140359
Rops11g01554 1498 CDD ABCC_MRP_domain1 638 838 - -
Rops11g01554 1498 MobiDBLite consensus disorder prediction 868 915 - -
Rops11g01554 1498 SUPERFAMILY ABC transporter transmembrane region 940 1244 IPR036640 GO:0005524|GO:0016020
Rops11g01554 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 638 861 IPR003439 GO:0005524
Rops11g01554 1498 FunFam ABC transporter C family member 5 624 870 - -
Rops11g01554 1498 FunFam ABC transporter C family member 10 307 620 - -
Rops11g01554 1498 Pfam ABC transporter transmembrane region 325 592 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g01554 1498 Pfam ABC transporter transmembrane region 961 1185 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g01554 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1221 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g01554 1498 CDD ABCC_MRP_domain2 1256 1476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01554 Rops-Chr11 23701120 23710466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01554 1256 1482 Calmodulin-binding Proteins AT2G36910 31.304 1.60e-29 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01554 - K05665 gmx:100804807 2537.68