Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01534 ATGGAAAACGATGAATATAGACGCAAATTCAAGGATGATTCAGTTCCCATCGATTTCGATGCAAAGGGTTACAGCCTCAGAGGAAAAATCATGCTTTCCGCTATTATCCTTCTCTTCTTAGTCGTAGTAATGATGATATGTTTACATGTATACGCACGCTGGTACCTTCTCCGTGCTCGCCGCCGTTACCTCCGCCGTCGCCGCCGTAATCAGCTTGTGTTCTACACTGACTCCGACAACCCCACCGCTGTTTCCGCCGCATCTCGCGGCCTCGACGCCTCCGTCATCGCCTCGCTTCCTGTCTTCTCCTACGACCCCAAGACCCACCCGGAAAACGCGGCGGAATGTGCGGTGTGTTTGTCGGAATTCGAACCGGGTGAAACGGGTCGGGTTTTGCCCAAGTGTAATCATTGTTTCCATATGGATTGTATCGACATGTGGTTCTTTACTCATTCCACGTGTCCCCTCTGTCGGGCCGCGGTGGAGCCCGATCCCGAGGCACAGGCCCGATCCGAAGTGGTTATAACGGTTTGTGGATTGGAACCCGGTTCGAGTTCCGGGTCGCGTTTGGAAGATGAGAGGCGAACCGGAAAGGAGGTTTGTTCTTCGTCGGTTGGATTGAGGAGGAAGTCCTCGTTGGTGGGCGTGACCGTTGAGGTTCCGGCGAGGAACGAGAGTTTCCGGAACGAGTTGGGTTGCGACTCGACGTCTTCGACTCAGTCGTCGTTCCGGTCGCCGATGAGTCGCATGCTGTCGTTCAAGAGGATCCTCAGCAGGGAACGGAAGGGGAACGTTTCTCCGTCCTCTTGTGGTGGTGGTGGTGGTTGCAGCTCCGCCGCCGAGTCGAACGCGGAGCGAGGTGGGAGAGACGAGACTCAGTGA 882 0.5544 MENDEYRRKFKDDSVPIDFDAKGYSLRGKIMLSAIILLFLVVVMMICLHVYARWYLLRARRRYLRRRRRNQLVFYTDSDNPTAVSAASRGLDASVIASLPVFSYDPKTHPENAAECAVCLSEFEPGETGRVLPKCNHCFHMDCIDMWFFTHSTCPLCRAAVEPDPEAQARSEVVITVCGLEPGSSSGSRLEDERRTGKEVCSSSVGLRRKSSLVGVTVEVPARNESFRNELGCDSTSSTQSSFRSPMSRMLSFKRILSRERKGNVSPSSCGGGGGCSSAAESNAERGGRDETQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01534 293 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Rops11g01534 293 SMART ring_2 116 157 IPR001841 -
Rops11g01534 293 MobiDBLite consensus disorder prediction 259 293 - -
Rops11g01534 293 Pfam Ring finger domain 115 158 IPR001841 -
Rops11g01534 293 MobiDBLite consensus disorder prediction 262 276 - -
Rops11g01534 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 166 IPR013083 -
Rops11g01534 293 SUPERFAMILY RING/U-box 96 168 - -
Rops11g01534 293 CDD RING-H2_EL5-like 115 158 - -
Rops11g01534 293 MobiDBLite consensus disorder prediction 229 248 - -
Rops11g01534 293 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 172 IPR044675 -
Rops11g01534 293 FunFam E3 ubiquitin-protein ligase ATL6 79 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01534 Rops-Chr11 23338710 23340034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01534 12 290 Rapid Response to Elicitors AT3G16720 50.162 2.16e-69 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01534 - - lja:Lj6g3v1468220.1 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01534 11 23338710 23340034 Rops11g01534 11 23338710 23340034 ECH
Rops2g04900 2 88358210 88359398 Rops11g01534 11 23338710 23340034 PCT