Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01523 ATGTGTGGAGGTGCTATCATTTCAGACTTCATTGGTGTGAAGCGTGGCCGGAAGCTCACCGCACAGGATTTCTGGTCTGAGCTTGATCTTTTTTCTGACCTCCTTGGTTTTGATGCTGCCACCAACTCCACTGCTTCAAAAGATTCACCACCCGTTTGCTTTGATCAAATCCCAAACAAAAAAGTGATAGCATGTGACAAGGGGGAGAAGAAGAAAAGCGTGGGTGCAGAGAAGGGTGAAGGAAAGAAGAGTGGGGAGGGTCAGCGAGCCCGCAAGCATGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCAGAGATAAGGGACCCACAAAAGGGTGTACGTGTATGGCTTGGCACCTTCTCCACCGCTGAAGAAGCCGCCAGAGCCTACGATGACGCCGCCAAGCGCATCCGTGGTGACAAGGCCAAGCTCAATTTCCCTGCCACCACTCCGCCACTGGAGCGCCACTCCAAGAAGAGATGTCTTAACCCCGGTCACGGTCAGGCTCAGGCTCAAGCCCAGCCCACCGGGCCTGAGGATCTCGACCTGAAGCAGCAAATCTCCAACCTGGAATGGCTCTTAGGCTTGGAGAATGAGCAGCCTCAGCCTCAGCCTAAGCCCGGGCCCATGTCAGGCGATGCTGAATGGGACAACAACTTCATGGACCTGTGGACGCTTGACGACGTCGTTATGCCAAACCGTCACCTGGTTTACTAA 729 0.546 MCGGAIISDFIGVKRGRKLTAQDFWSELDLFSDLLGFDAATNSTASKDSPPVCFDQIPNKKVIACDKGEKKKSVGAEKGEGKKSGEGQRARKHVYRGIRQRPWGKWAAEIRDPQKGVRVWLGTFSTAEEAARAYDDAAKRIRGDKAKLNFPATTPPLERHSKKRCLNPGHGQAQAQAQPTGPEDLDLKQQISNLEWLLGLENEQPQPQPKPGPMSGDAEWDNNFMDLWTLDDVVMPNRHLVY* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01523 242 MobiDBLite consensus disorder prediction 148 184 - -
Rops11g01523 242 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Rops11g01523 242 Gene3D AP2/ERF domain 94 153 IPR036955 GO:0003700|GO:0006355
Rops11g01523 242 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Rops11g01523 242 MobiDBLite consensus disorder prediction 69 92 - -
Rops11g01523 242 PANTHER DNA-BINDING DOMAIN 72 172 IPR044808 GO:0003700|GO:0009873
Rops11g01523 242 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Rops11g01523 242 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Rops11g01523 242 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Rops11g01523 242 FunFam Ethylene-responsive transcription factor 2 93 152 - -
Rops11g01523 242 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Rops11g01523 242 CDD AP2 95 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01523 Rops-Chr11 22932879 22934803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01523 1 234 AP2-EREBP Transcription Factor Family AT3G16770 42.125 4.36e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops11g01523 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01523 K09286 - gmx:100817253 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01523 11 22932879 22934803 Rops11g01523 11 22932879 22934803 ECH