Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01517 ATGGAGGCTACCTACTCTCTTTCATTCACTGATTTCAATCCTCTCCCTTTTCCCACAAAGCGCATCATTGCTCTCAATTCTTCACCATTTACCTCAACCTCAAGGGTATCTTTTTCTTTGCAACAACAACATCACAATAAACCCATCAATGTAAGTTACTACCCTCTTGAAGTTGTATGCAAAAACGCTTCTTCTTCTTCTTCTTATTCTTCACGCTCCTTTGTGGAGTCCTACCTTATCAACACTCTAGGCTTCTCACCCGAATCGGCTCTAGAAGCTTCCAAGGAAGCTCATTTCAACACATCCCAGAAGCCAGATTCAGTTTTGGACTTATTCAGAAACTGGGGTTTCTCAAACACCCATTTGCACCACATCATTACAAAGGATCCATGGCTACTTTCTTGCAACCCCCACAAAAGGGTTCTTCCCAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTCTCTCCGACATTGTCTTCATAGTTACCAAGACACCAAGGTTCCTCCATCGTAGCCTCGAGAATCATATAGTCCCTACATATGAATTGCTACATAGATTCTTGCTATCTGATAAGGAGACATTGGCTTGTATCATTAGAAACACACTTTCCTTTTGTAGTAGTAGGATGAGACCTAACGTGAAATTGTTGATTGATTGTGGAGTTTCTGATTCAAACATTGTCATATTGCTTCGTAAATGGCCTAGTGTATTTTCCTCAAATCATTTGCTCAATGTGGTGGAAGAAATAAAGGAATTGGGGTTTGACCCTTCAAAATCAAGTTTTAGTTTAGCATTACTTGCTAAACTTACTGTCAGAAAAACACATTGGGATGAGAAAGTTGATGTCTTTAAGAAGTGGGGTTGGTCTGATGAGAACATTCTTGAAGCATTTAGGAGGCAGCCTAATTGTATGTTAACATCATGTGATAAAATTAATGCTGTGATAGGGTTTTGGGTCGATGAGTTGGGGTGGGATGCTCAAGCCCTAGTCAAAGGGACTAATATTTTTGGATTTAGTTTGGAGAAGAGGATCATTCCAAGGGCTTTTGTTGTTAAGTATCTACTTGCAGAAGGTTTGATAGATAAGAATGCTAGCTTATTTACACCCTTTATAATTTCTGAGAAGATGTTCCTGCAGAGGTTTGTGGAATGTTTTAAGGAAAATGAAACATCTCACCTGTCAAAGCTATATCAGGAAAAAATGAATCTTCAAGAGAATAGGGAGGTAACATCTGGCAGTTATCAAAGGGTTAACTTATGA 1263 0.3903 MEATYSLSFTDFNPLPFPTKRIIALNSSPFTSTSRVSFSLQQQHHNKPINVSYYPLEVVCKNASSSSSYSSRSFVESYLINTLGFSPESALEASKEAHFNTSQKPDSVLDLFRNWGFSNTHLHHIITKDPWLLSCNPHKRVLPKFQFLLSKGASLSDIVFIVTKTPRFLHRSLENHIVPTYELLHRFLLSDKETLACIIRNTLSFCSSRMRPNVKLLIDCGVSDSNIVILLRKWPSVFSSNHLLNVVEEIKELGFDPSKSSFSLALLAKLTVRKTHWDEKVDVFKKWGWSDENILEAFRRQPNCMLTSCDKINAVIGFWVDELGWDAQALVKGTNIFGFSLEKRIIPRAFVVKYLLAEGLIDKNASLFTPFIISEKMFLQRFVECFKENETSHLSKLYQEKMNLQENREVTSGSYQRVNL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01517 420 SMART mt_12 228 256 IPR003690 GO:0003690|GO:0006355
Rops11g01517 420 SMART mt_12 159 190 IPR003690 GO:0003690|GO:0006355
Rops11g01517 420 SMART mt_12 327 361 IPR003690 GO:0003690|GO:0006355
Rops11g01517 420 SMART mt_12 295 326 IPR003690 GO:0003690|GO:0006355
Rops11g01517 420 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Rops11g01517 420 SMART mt_12 195 223 IPR003690 GO:0003690|GO:0006355
Rops11g01517 420 Pfam mTERF 109 256 IPR003690 GO:0003690|GO:0006355
Rops11g01517 420 Pfam mTERF 210 378 IPR003690 GO:0003690|GO:0006355
Rops11g01517 420 PANTHER CGI-12 PROTEIN-RELATED 71 387 IPR003690 GO:0003690|GO:0006355
Rops11g01517 420 Coils Coil 387 407 - -
Rops11g01517 420 FunFam Mitochondrial transcription termination factor-like 173 389 - -
Rops11g01517 420 Gene3D Transcription termination factor 3, mitochondrial 81 204 IPR038538 -
Rops11g01517 420 Gene3D Transcription termination factor 3, mitochondrial 205 390 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01517 Rops-Chr11 22799148 22800410 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops11g01517 mTERF 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01517 K15032 - gmx:102667698 373.244