Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01516 ATGGGGAGGATGGCACAAGAATCAGATTACAAAACCAAGTTGGTATTGGAGATTTGCTCCGTTTCCACACGTTCAGTTGTATGTGTTCATAGACTTGTCTCAAACCCAGCTAAGGCACCTTTCATTGATTGGTATTGCATTCTTGGTGTGGAAGAAAATGCAGGGGTAAATACTATTCGCAAGAAATACCATAAACTTGCCTTGCAACTTCATCCAGACAAGAATAAACACCCCAAGGCTGAAATTGCATTCAAGCTTGTCTCTGAGGCATATACATGTCTGTCTGATGCTGCAAAAAGAAAAGCTTTTAACTTGGAGAGATATAAGAGCTTCTGCATTGAGTGCAATAGAATCCCATATAAATCCAGCATTGTCCCTAGCAATTCCAATGGTTCAAGCTTCAAGCCATGGAATATAATCAGCAGGTCAATATCTAGTAAAGTTAGGAGAAATATTAGGGACATGAGAGAAAGATTGAAGGAGGAGGTTAAGGTGATAGAGAACTGTCTACAGGCAAATTCAATGTCAAAGAAAGAATCTTCTCTTTACCATCCAAGTGAGTATCTACATGGAAGCAGGTCCCAGCATAGAGTTGAGAAAGAAATCCCTGTTTTTAATCCATCAAACTATAAGTACCAAGACTACCCTCGTCCTAGGGGCAATGTTTACAAGAATTCTAAGACATGTTGGTACTTGCAGACAGAAAATATGGTGCACATTGACAAGGGAGGAGTAAAGTACGCCTCCCCAGTTTTTGAGGTCAAATCACAAAGGAGTAGTATTCAGACTAGCAAATTTGCTTATGTCCCATCACAATGTTAG 822 0.399 MGRMAQESDYKTKLVLEICSVSTRSVVCVHRLVSNPAKAPFIDWYCILGVEENAGVNTIRKKYHKLALQLHPDKNKHPKAEIAFKLVSEAYTCLSDAAKRKAFNLERYKSFCIECNRIPYKSSIVPSNSNGSSFKPWNIISRSISSKVRRNIRDMRERLKEEVKVIENCLQANSMSKKESSLYHPSEYLHGSRSQHRVEKEIPVFNPSNYKYQDYPRPRGNVYKNSKTCWYLQTENMVHIDKGGVKYASPVFEVKSQRSSIQTSKFAYVPSQC* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01516 273 ProSiteProfiles dnaJ domain profile. 43 107 IPR001623 -
Rops11g01516 273 Pfam DnaJ domain 43 104 IPR001623 -
Rops11g01516 273 CDD DnaJ 43 96 IPR001623 -
Rops11g01516 273 Gene3D DnaJ domain 42 159 IPR036869 -
Rops11g01516 273 SUPERFAMILY Chaperone J-domain 33 106 IPR036869 -
Rops11g01516 273 PANTHER BNAC03G44070D PROTEIN 24 241 - -
Rops11g01516 273 SMART dnaj_3 42 99 IPR001623 -
Rops11g01516 273 PRINTS DnaJ domain signature 63 78 IPR001623 -
Rops11g01516 273 PRINTS DnaJ domain signature 79 99 IPR001623 -
Rops11g01516 273 PRINTS DnaJ domain signature 45 63 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01516 Rops-Chr11 22780999 22782122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01516 43 104 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 1.57e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01516 - - gmx:100778573 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01516 11 22780999 22782122 Rops11g01516 11 22780999 22782122 ECH
Rops2g04913 2 88530844 88532070 Rops11g01516 11 22780999 22782122 PCT