Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01501 ATGGCCTCGCACGTGCAAAGCTGCTTCTTCTTCACCGTCGCCGTCTTGGCCATCTTCGCCGCATCACCGTCGATGTCTCAGCCGGAAACCGCCGATTCATGCAACGGAATATTCCTGTCCTACGTCTACACCGGAGGTGCGAGGCTGCCGCCGAACGTGTCCGACCCGGCGGAGCAACCGTACCGGTTCGAGTCGACGATGACGGTGCTAAACAACGGGCTCGAGGAGCTAAAGGCTTGGAGGGTGTTGGTGGGGTTTCAGCACAACGAGTGGTTGGTGTCTGCGTCCAACGCAGTTCTTGCCAACGGCACGAGTATCCCTGGTGCAGTTGGAAACGGCACCGTTTTGGCTGGGTCGTCGGTGACTGATCTGAAGACGGCGGCGGCTACTGCCGGTGACTTGACCCAGATGCGGGTTCGGGTGGAGCTAGTGGGGACCCAACTTGGGGTGGCACCACCCAACGTGCCCATGCCGAATGATATAAAACTGGCTAATGATGGATTCGTGTGTGGTGAACCCACTCGTCAAGGGAACGAGACTCATGTCTGTTGCACAAGTGACCCCAATTTCAAAACAAACATAACCACAGATGAAGATTTCCTACCCAGACAGAATGGTGATCTTACCATCATGTATGATGTGATCGAAGCTCACGATTCCAGTTACTGGGCAGAGGTTACAATTGCAAACCACAACCCCCTTGGTCGTCTTGACAATTGGAGATTAAGCTGGGACTGGAACAATGATGAGTTTATCCACACAATGAAAGGTGCTTATCCATCTGTTGTTGATTTTTCTGAATGTGTCTTTGGCTCACAAGGTGAATTCTACAAGGAACTTGACTTTGCCAATGTATTGAACTGTGAAAAAAGGCCAACCATCATTGATCTCCCTCCCACATGGTTCAATGATTCAAACCTTGGAAAAATCCCTTTTTGCTGTAGGAATGGTACTATATTGCCACCAACAATGGACCCCAGCTTGTCAATTTCAAGGTTCCAAATGCAGGTCTTCAAAATGCCACCAAACCTTAATCGCTCCAAGCTTACACCACCACACAACTGGGAGATAAGAGGTACACTCAACCCTGAATACCAATGTGGACAACCCATCAGGGTTAGTCCTAGTGAATCTCCAGACACAACAGGGTTACCATCAAACATATCTGCAATTGCTAGTTGGCAAGTTGTGTGCAACATAACAAAGTCAAAAAGGGCAACCCCTAAATGTTGTGTCTCATTTTCAGCCTATTACAATGAATCAATCATTCCTTGCAAGACATGTGCATGTGGATGCCCCAGTAACCCAGAGAGAACCTGTAGTACTACTACACCAGCTATGTGGCTTCCATCAGATGCACTTCTTGTTCCTTTTGAGAATCGAAGTGAAAAGGCTTTGACTTGGGCTAACATGAAAAATTTACCAGTGCCTAACCCTATGCCTTGTGGTGACAACTGTGGTGTGAGCATAAACTGGCATGTATTTTCAGATTACCGTAAAGGTTGGACTGCAAGGATCACACTTTTTAACTGGGGTGACACAGATTTTGCTGATTGGTTTGCTGCAGTACAAATGGACAAAGCTGCATCAGGTTTTGAGGAAATGTATTCATTCAATGCAAGCACTTTAGGCAGTGTGAACGATACAATATTCATGCAAGGTAAGCCAGGATTGAATTTTCTTGTAGCAGAAGCAAATGGATCCGACCCTAGGAGAGATCCCAGGGAGCCTGGGAAACAGCAATCAGTAATCTTGTTTACAAAGAAAGCTACTCCTGGCATCAATGTGGCCGGTGGTGATGGGTTTCCTAGTAAAGTTTTCTTCAATGGTGAGGAGTGCTCTCTTCCTTCAGTGTATCCAAGCAGTGGTTTAAGGATGGAGTTTTCCTTAGCTACTACCATTTTCCTAATACTGTTGCCTATCATCTTGATGCGGCAATAG 1941 0.4719 MASHVQSCFFFTVAVLAIFAASPSMSQPETADSCNGIFLSYVYTGGARLPPNVSDPAEQPYRFESTMTVLNNGLEELKAWRVLVGFQHNEWLVSASNAVLANGTSIPGAVGNGTVLAGSSVTDLKTAAATAGDLTQMRVRVELVGTQLGVAPPNVPMPNDIKLANDGFVCGEPTRQGNETHVCCTSDPNFKTNITTDEDFLPRQNGDLTIMYDVIEAHDSSYWAEVTIANHNPLGRLDNWRLSWDWNNDEFIHTMKGAYPSVVDFSECVFGSQGEFYKELDFANVLNCEKRPTIIDLPPTWFNDSNLGKIPFCCRNGTILPPTMDPSLSISRFQMQVFKMPPNLNRSKLTPPHNWEIRGTLNPEYQCGQPIRVSPSESPDTTGLPSNISAIASWQVVCNITKSKRATPKCCVSFSAYYNESIIPCKTCACGCPSNPERTCSTTTPAMWLPSDALLVPFENRSEKALTWANMKNLPVPNPMPCGDNCGVSINWHVFSDYRKGWTARITLFNWGDTDFADWFAAVQMDKAASGFEEMYSFNASTLGSVNDTIFMQGKPGLNFLVAEANGSDPRRDPREPGKQQSVILFTKKATPGINVAGGDGFPSKVFFNGEECSLPSVYPSSGLRMEFSLATTIFLILLPIILMRQ* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01501 646 Pfam COBRA-like protein 222 401 IPR006918 GO:0010215|GO:0016020
Rops11g01501 646 PANTHER COBRA-LIKE PROTEIN 7 24 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01501 Rops-Chr11 22652640 22653215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01501 34 630 COBRA Gene Family AT4G16120 65.672 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01501 - - gmx:100778971 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01501 11 22652640 22653215 Rops11g01501 11 22652640 22653215 ECH
Rops2g04935 2 88776886 88779291 Rops11g01501 11 22652640 22653215 PCT