Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01494 ATGGGGAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAAAAAGGAAGATGGACTGATGAAGAGGATAAGATCTTGACTGATTACATCAAAGAAAATGGTGAAGGATCATGGAAATCCTTGCCTAAAAATGCAGGTTTGTTAAGGTGTGGAAAGAGTTGCAGACTAAGATGGATCAACTATTTGAGAGAAGATGTGAAGAGAGGTAATATCACTCCTGAGGAGGAAGAGATGATTGTTAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCTGTGATAGCAGCACATTTACCAGGACGTACAGATAATGAGATTAAGAACTATTGGAACTCTCATTTGAGGAGAAAGATTTATTGTTTCATGAGATCTTTAAATGAGTCTTTGCCACCTATTGACATGGCTGCTATAAATGAAGCTGCTACATCCAAGAGAAGAGGTCAAAGGACAAGAAATAAGCCAGCCATGGAAGAGGACAATAACATGGCTTTGAGCCAAAACTCCCTTGAATCAATGCCTCAAAGGAAAGCAACTTCACAAAGTTGCAATAGTGGAGAAGCTGATGAAATTTCAATTATGGATTATGAAACAGAGGGCAACACAAATAGTACAATTGCATCATACCCCAGTATTAATAATGGAGATTTTGAGGGCTTTTTGGGACCATACCAATGGCCAGATGATGAAATAATGAAACTTAGTCACATATTTGAAAATGGGGTGGGGAATTTAACCCTTGAGGAGGAGGTTAATGGGAATGACTGTGGGCAGATGAATGTAGAGATAATGGCAACAACAAGTCAAGAGAGCAAGAGTGGAGTTTGGAGCTCATCAAATGCTGAGAGTGGAGAGTGGTATACTAATTGTTCATCAGTGAATTCTACCAATGATTATCAATGGTGTGATTGGGATATGGTTGGTGGTAGTGTTCAATCTCATAATCAATGGGACCTTTGTCAAGAAGACCAAATTGTGACTTGCTTGTGGGGTGCTGGCATTGGTGATATATAA 1005 0.397 MGRAPCCEKVGLKKGRWTDEEDKILTDYIKENGEGSWKSLPKNAGLLRCGKSCRLRWINYLREDVKRGNITPEEEEMIVKLHAVLGNRWSVIAAHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPIDMAAINEAATSKRRGQRTRNKPAMEEDNNMALSQNSLESMPQRKATSQSCNSGEADEISIMDYETEGNTNSTIASYPSINNGDFEGFLGPYQWPDDEIMKLSHIFENGVGNLTLEEEVNGNDCGQMNVEIMATTSQESKSGVWSSSNAESGEWYTNCSSVNSTNDYQWCDWDMVGGSVQSHNQWDLCQEDQIVTCLWGAGIGDI* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01494 334 MobiDBLite consensus disorder prediction 157 185 - -
Rops11g01494 334 FunFam Myb transcription factor 71 116 - -
Rops11g01494 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops11g01494 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops11g01494 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops11g01494 334 CDD SANT 16 61 IPR001005 -
Rops11g01494 334 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Rops11g01494 334 Gene3D - 11 67 - -
Rops11g01494 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops11g01494 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops11g01494 334 SMART sant 13 63 IPR001005 -
Rops11g01494 334 SMART sant 66 114 IPR001005 -
Rops11g01494 334 FunFam Myb transcription factor 11 67 - -
Rops11g01494 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops11g01494 334 MobiDBLite consensus disorder prediction 138 185 - -
Rops11g01494 334 Gene3D - 71 116 - -
Rops11g01494 334 CDD SANT 71 112 IPR001005 -
Rops11g01494 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01494 Rops-Chr11 22530227 22534125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01494 1 316 MYB Transcription Factor Family AT5G49330 42.857 2.22e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g01494 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01494 K09422 - gmx:100819041 499.975