Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01485 ATGATGGCACACAACTTAACGGGGCAACTTGTGGGTTCAGAGATACATGGATTCCACACGTTGAGGGACCTGGATATTGGGAACACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTGTAATCACAAATATTTCACGATCAATGTCAAGCCAGTGCATTTCCCCCCAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGATGGGAAAACAGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGCAATGAAGAAAGGATCCATGTATATTATGCACATGGCCAAGATAACCCAAGCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGAACATAGTCCTTGTTCATTATCGTGAAACACAGGAGTTGCAAAGTTCTCCTGTTACACCTGTAAATTCTCATTCAAGTTCTGCCTCTGATCCAACTGTGCCATGGATTTTATCAGAAGATTTAGATTCAGGGACCAAAAGTGCTTATACTGATGGGCTTAATGACAATTTAAGAGTCAAAAGTCATGAACTGAGGCTTCAAGAGATTAATACACTTGAATGGGATGACCTAGTGGTTTCAAATGTTAACACCTATACTGTTCCTAATGGAGGCAATGAACCAGGTTTGTATCAACAAAATCAAAGTTTACTCAATGGTAGCTTTGGCAACGTCGCGAGTAATCCTTCTGCAGAAATTCCTTCTTTCAGTAATTTAACTCAGCCAATTTCTGGGAGCAGTAGTGTTACTTACAGTTTTCCAGAAAGTGTTAATCTTCAGAGTAATCGTCCTATCTCTGGTGGTGTTGATTCCCTGGGCACTTTAGTCAATGAAGGCTTGCAAAGTCAGGACAGCTTTGGAAGGTGGATAAACATCATATCTGATGCACCATGTTTTGTAGATGAATCAGCTCTTGAATCATCAGTTTCTTCATCTGTTCATGAACCATATTCATCACTGGTGGGGAATAATCAGCAATCTTCTCTACCAGAACAAGTATTTAATCTCACTGAGGTGTCCCCTGCGTGGGCATCTTCTACTGAGAAAACAAAGATCCTGGTGACTGGATTTTTTCATAATGACTATCAACACCTCGCAAAGTCCAATCTATTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAAATTGTTCAGGTTGGGGTTTACCGATGCTGGGTATCACCGCATTCTCCTGGATTCGTGAATCTCTTTTTGAGCTTTGATGACCATAAGCCTATTAGCCAATTTGTTAATTTTGAGTATCGTACTCCTATTTTGCATGATCCTGCTGCTTCAATGGAACAGAAATACAACTGGCATGAATTTCGATTTCAGATGAGGCTTGCTCATTTGCTCTTTGCTTCACAAAAGAGCCTTGATGTTTTCTCTAGTAAAGTATCACCTAATGTACTGAAAGAGGCTAGAAAATTTGCCTTCAAAACATCATTTATTTCCAAAGGTTGGCAATACTTGATGAAGTCAATTGATGACAATACAACTCCATTTCCACAAGCAAAAGATGCCTTGTTTGAAATTGCATTGAAAAACAAGCTACAGGAATGGCTTTTGGAACGGATTGTCGTAGGCTATAAGACTACTGAGTATGATGCTCAAGGCCAAGGTGTAATTCATTTGTGTGCAGTTTTGGGATATACATGGGCTATTTCCTTATTTTCATGGTCAGGCTTGTCGATGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAATGGAGAAAATGGTTGCAACTTTGTTGTCTTGTGGGGCAAGGCCAAACTTAGTCACCGATCCAACTCCTCAAAATCCTGGTGGATGTAGTGCTGCTGATCTTGCTTATATGCAGGGATATGATGGCTTAGCAGCTTATCTTTCAGAGAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATATCAGTGGCTCACTGGAAATTAGCACAACTGATCCAGTAAATTCTGAGAACCTTACTGAGGATCAGCTGTACCTAAAGGATACATTGGCAGCTTACCGAACAGCTGCCGACGCAGCAGCACGCATACAAGTTGCATTTAGGGAGCACTCACTAAAATTGCGATCTAAGGCAGTTGGATTTTGCAGCCCAGAGGAGGAAGCACGCCACATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGTAACTACGAGACAAGGAAAATGATGGCAGCAGCTGCTCGGATCCAGTATAGATTCCGTACGTGGAAGCTGCGTAGAGAATTTCTCCACATGCGACATCAGGCTATTAAAATTCAAGCTGCATTCAGGGGCTTTCAAATGCGAAAGCAATATCGCAAAATCGTATGGTCTGTTGGTGTGCTTGAGAAAGCAATCCTGCGTTGGCGGTTAAAGAGAAAAGGCTTCCGCGGGCTGCAGGTTAATCCTGTGGAAGAAATGAAAGATGAGAATCAGGAAAGTGATGTAGAAGAGGACTTCTTTAGGACTGGTAGGAAACAAGCGGAAGAACGGGTTGAAAGGTCTGTAGTTCGTGTACAAGCCATGTTCCGTTCAAAGAAAGCACAACAAGAGTATAGCAGGATGAAGCTGGCACATAGTCAAGCAAAGCTGGAACTGGAATTAGAAGAACTCATCATATCATAG 2709 0.4179 MMAHNLTGQLVGSEIHGFHTLRDLDIGNTMEEAKSRWLRPNEIHAILCNHKYFTINVKPVHFPPSGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPSFVRRCYWLLDKSLENIVLVHYRETQELQSSPVTPVNSHSSSASDPTVPWILSEDLDSGTKSAYTDGLNDNLRVKSHELRLQEINTLEWDDLVVSNVNTYTVPNGGNEPGLYQQNQSLLNGSFGNVASNPSAEIPSFSNLTQPISGSSSVTYSFPESVNLQSNRPISGGVDSLGTLVNEGLQSQDSFGRWINIISDAPCFVDESALESSVSSSVHEPYSSLVGNNQQSSLPEQVFNLTEVSPAWASSTEKTKILVTGFFHNDYQHLAKSNLLCVCGDVSVPVEIVQVGVYRCWVSPHSPGFVNLFLSFDDHKPISQFVNFEYRTPILHDPAASMEQKYNWHEFRFQMRLAHLLFASQKSLDVFSSKVSPNVLKEARKFAFKTSFISKGWQYLMKSIDDNTTPFPQAKDALFEIALKNKLQEWLLERIVVGYKTTEYDAQGQGVIHLCAVLGYTWAISLFSWSGLSMDFRDKFGWTALHWAAYYGMEKMVATLLSCGARPNLVTDPTPQNPGGCSAADLAYMQGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLEISTTDPVNSENLTEDQLYLKDTLAAYRTAADAAARIQVAFREHSLKLRSKAVGFCSPEEEARHIVAAMKIQHAFRNYETRKMMAAAARIQYRFRTWKLRREFLHMRHQAIKIQAAFRGFQMRKQYRKIVWSVGVLEKAILRWRLKRKGFRGLQVNPVEEMKDENQESDVEEDFFRTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKLAHSQAKLELELEELIIS* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01485 902 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Rops11g01485 902 Gene3D - 524 662 IPR036770 -
Rops11g01485 902 ProSiteProfiles IQ motif profile. 861 889 IPR000048 GO:0005515
Rops11g01485 902 ProSiteProfiles Ankyrin repeat region circular profile. 593 621 - -
Rops11g01485 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 807 IPR027417 -
Rops11g01485 902 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Rops11g01485 902 FunFam calmodulin-binding transcription activator 5 523 663 - -
Rops11g01485 902 Gene3D - 756 804 - -
Rops11g01485 902 ProSiteProfiles IQ motif profile. 780 804 IPR000048 GO:0005515
Rops11g01485 902 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Rops11g01485 902 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 889 - -
Rops11g01485 902 SMART ANK_2a 593 622 IPR002110 GO:0005515
Rops11g01485 902 SUPERFAMILY E set domains 357 444 IPR014756 -
Rops11g01485 902 SUPERFAMILY Ankyrin repeat 535 655 IPR036770 -
Rops11g01485 902 Pfam IQ calmodulin-binding motif 784 801 IPR000048 GO:0005515
Rops11g01485 902 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Rops11g01485 902 Gene3D Immunoglobulins 352 447 IPR013783 -
Rops11g01485 902 SMART iq_5 756 778 IPR000048 GO:0005515
Rops11g01485 902 SMART iq_5 779 801 IPR000048 GO:0005515
Rops11g01485 902 SMART iq_5 859 881 IPR000048 GO:0005515
Rops11g01485 902 ProSiteProfiles IQ motif profile. 738 767 IPR000048 GO:0005515
Rops11g01485 902 SMART CG_1_2 30 147 IPR005559 GO:0003677
Rops11g01485 902 FunFam Calmodulin-binding transcription activator 5 352 448 - -
Rops11g01485 902 Pfam Ankyrin repeats (3 copies) 535 622 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01485 Rops-Chr11 22403598 22413458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01485 30 893 CAMTA Transcription Factor Family AT3G16940 57.077 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Rops11g01485 CG-1 4.5e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01485 K21596 - gmx:100819198 1466.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01485 11 22403598 22413458 Rops11g01485 11 22403598 22413458 ECH
Rops2g04948 2 89038721 89051182 Rops11g01485 11 22403598 22413458 PCT