Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01454 ATGGCATCAGCAAGCAGAGGAGGAAATGCTTCAGTGACGGCGCAACAACAAGGAGAGAGTTTCCGAACAAAAGGAACCGAAGACGAGAGAAAGAGAAGCGATTCCATGAGAAAAGCCATAGCTCAGTACACTGAAGACGCCAGACTTCACGCCGTTTTTGAACAATCAGGTGAATCCTTCGATTACTCACAGTCGCTACGTGTAACGGCGGAGTCGGTGCCGGAGCAACAAATAACCGCTTACTTAGCCAAAATTCAACGTGGCGGTTCCATCCAACCGTTTGGTTCCATGATCGCCATTGATGAACCCTCGTTTCGAATCCTCGGTTACTCCGAAAACGCACGTGACATGCTCGGAATCGCTCCACAATCGGTTCCTTCCCTTGATGTTGATTCATTCTCCTCTTTGGCACTCGGCACCGATGTTCGTTCTCTCTTCACTCATTCAAGTGCACTTCTTTTGGAAAAGGCTTTCGCTGCACGCGAGATTAGCCTCATGAACCCTATCTGGATCCATTCTAGAACCACTGGGAAGCCTTTTTATGGTATCCTTCATCGTATTGATGTTGGTGTTGTTATCGATTTAGAACCGGCACGTTCGGAGGATCCGGCGTTGTCCATAGCCGGCGCCGTTCAGTCTCAGAAGCTGGCTGTTCGCGCGATTTCGCAGCTGCAATCGCTTCCCGGAGGGGATGTGAAGCTTCTATGTGATGCTGTGGTGGAGAGTGTGAGAGAATTGACGGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAACATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTATATGGGTTTGCATTATCCTGCTACTGATATTCCACAAGCTTCTAGGTTTTTGTTTAAGCAAAATAGGGTTAGGATGATTGTGGATTGTGATTCTTCACCTGTTAGGGTTATTCAAGATGAGGCTCTTTTGCAGCCTCTTTGTTTGGTGGGGTCCACATTGAGAGCTCCTCATGGTTGCCATGCTCAGTATATGGCGAACATGGGTTCAATTGCTTCTTTGGTTATGGCTGTGATCATTAATGGGAATGATGAGGACGCTGTTGGGATTGGTGGAAGGAGTTCGATGAGGTTGTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTTTGAGGTATGCTTGTGAGTTCCTCATGCAGGCTTTTGGGCTTCAGTTGAATATGGAGCTTCAGCTTGCGAAGCAGTCGTTGGAGAAGCGGGTTTTGAGGACGCAGACTTTGTTGTGTGATATGCTTCTTAGGGATTCTCCTACTGGGATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTCAAGTGTGATGGAGCTGCTTTGTATTACCAAGGGAACTACTACCCTTTGGGTGTCACCCCAACTGAATCTCAGATGAGGGATATCATAGATTGGTTGTTGGCCTTCCATGCTGATTCGACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGATATCCTGGGGCTGCTTCTCTTGGGGATGCAGTTTGTGGGATGGCTGTTGCTTATATCACGGAGAAGGATTTTCTTTTCTGGTTCAGATCCCACACGGCGAAAGAGATCAAATGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGCCAGAGAATGCACCCTCGATCTTCCTTCAAAGCATTTTTGGAAGTGGTCAAGAGCCGTAGTTTGCCGTGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGAGACACGTTTAAAGATGCCGCTGAGCATAGTGATTCTAAGGCTGTTGTGCATTCGCATTTGGCTGAACTAGAGTTGCAAGGGGTAGATGAACTAAGTTCTGTGGCCAGAGAAATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCCGTTGATGTTGATGGCCACATAAATGGATGGAATGCGAAGGTTTCAGAATTGACTGGACTCTCAGTTGAGGAGGCTATGGGGAAGTCCTTGGTTCATGATCTTGTGTATAAGGAGTCTCAAGAAACTGTAGACAAGCTTCTGTCTCGTGCTTTGAAAGGTGAAGAAGATAAGAATATTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCCAGGATTATAGAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAGGTTGTGATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATCCATTGATCCCTCCCATTTTTGCGTCGGATGATAACACATGTTGCTCAGAGTGGAACAATGCCATGGAAAAGCTTACTGGTTGGGGCCGTGCGGATGTCATTGGAAAATTGTTGGTGGGAGAGGTATTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATGCTATAACAAAGTTCATGATTGTCTTGCACAATGCGCTTGGTGGACATGATACAGATAAATTCCCTTTTTCATTTCTTGACCGGCATGGAAAGTACGTGCAAACTATCTTGACTGCAAATAAGAGAGTTAACATGGATGGTCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCTCTGAAGGTCCAGAAACAACAGGAGAAGAGTTGCTTTGTTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACTGGCTTGACAGATGAGCAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTGAAGATAATACGGGACGTTGATCTGGAAAGCATCGATGATGGGTCACTGGAGCTTGAAAAGGGGGAATTCTTTCTTGGGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTGAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGACCATTTGAGGATTCAACAAGTCTTGGCTGATTTCTTGTTGAACATGGTGCGCTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTGTGTCCAAGAATAAAACAAGTTTCAGATGGGCTAACTCTTCTGCATGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAATTGATTCAAGACATGTTCCATAGCAGTCGATTATGCTCACCTAACAAGGCAACTTACGGTGCAATCTTTGAACAAGCTGATTTGGCCAGTTATCCCAGTCACATGGTAGATGAAATGCTATGTCACCAACATGTGTACATCTTCATGGCCAAGTGGGTGTCCTCTGAAAATTTTCAAGCAAATGCTTACATCATTAGCAGCTACAATGGACTCCACTCCATGGTTGGTTGTATTGAACTGCATCCATCTCCTGCATTGTTCTCTGTTCTGAAAGTAACTGCTTATACGGCGTTTTTCCAAGGTTGCAAATAA 3537 0.4459 MASASRGGNASVTAQQQGESFRTKGTEDERKRSDSMRKAIAQYTEDARLHAVFEQSGESFDYSQSLRVTAESVPEQQITAYLAKIQRGGSIQPFGSMIAIDEPSFRILGYSENARDMLGIAPQSVPSLDVDSFSSLALGTDVRSLFTHSSALLLEKAFAAREISLMNPIWIHSRTTGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYMGLHYPATDIPQASRFLFKQNRVRMIVDCDSSPVRVIQDEALLQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEDAVGIGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAKQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTESQMRDIIDWLLAFHADSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDTFKDAAEHSDSKAVVHSHLAELELQGVDELSSVAREMVRLIETATAPIFAVDVDGHINGWNAKVSELTGLSVEEAMGKSLVHDLVYKESQETVDKLLSRALKGEEDKNIEIKMRTFGPEHQNKAVFVVVNACSSQDYRNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNNAMEKLTGWGRADVIGKLLVGEVFGSCCQLKGSDAITKFMIVLHNALGGHDTDKFPFSFLDRHGKYVQTILTANKRVNMDGQIIGAFCFLQIVSPELQQALKVQKQQEKSCFVRMKELAYICQEVKNPLSGIRFTNSLLEATGLTDEQKQFLETSAACEKQMLKIIRDVDLESIDDGSLELEKGEFFLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDHLRIQQVLADFLLNMVRYAPSPDGWVEIHVCPRIKQVSDGLTLLHAEFRMVCPGEGLPPELIQDMFHSSRLCSPNKATYGAIFEQADLASYPSHMVDEMLCHQHVYIFMAKWVSSENFQANAYIISSYNGLHSMVGCIELHPSPALFSVLKVTAYTAFFQGCK* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01454 1178 Pfam PAS fold 761 880 IPR013767 GO:0006355
Rops11g01454 1178 Pfam PAS fold 630 745 IPR013767 GO:0006355
Rops11g01454 1178 Gene3D PAS domain 84 334 - -
Rops11g01454 1178 PIRSF Phytochrome_conventional 16 1093 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Rops11g01454 1178 Gene3D PAS domain 774 883 - -
Rops11g01454 1178 SMART gaf_1 231 421 IPR003018 GO:0005515
Rops11g01454 1178 Pfam His Kinase A (phospho-acceptor) domain 907 966 IPR003661 GO:0000155|GO:0007165
Rops11g01454 1178 SUPERFAMILY GAF domain-like 211 408 - -
Rops11g01454 1178 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 977 1082 IPR036890 -
Rops11g01454 1178 MobiDBLite consensus disorder prediction 22 36 - -
Rops11g01454 1178 SUPERFAMILY GAF domain-like 419 598 - -
Rops11g01454 1178 ProSiteProfiles PAS repeat profile. 761 813 IPR000014 -
Rops11g01454 1178 FunFam Phytochrome 883 964 - -
Rops11g01454 1178 ProSiteProfiles PAS repeat profile. 627 698 IPR000014 -
Rops11g01454 1178 Gene3D - 884 964 - -
Rops11g01454 1178 FunFam Phytochrome 623 755 - -
Rops11g01454 1178 Pfam GAF domain 232 411 IPR003018 GO:0005515
Rops11g01454 1178 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 200 IPR035965 -
Rops11g01454 1178 PRINTS Phytochrome signature 630 646 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 PRINTS Phytochrome signature 246 265 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 PRINTS Phytochrome signature 526 545 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 PRINTS Phytochrome signature 743 763 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 PRINTS Phytochrome signature 146 168 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 PRINTS Phytochrome signature 331 352 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 PRINTS Phytochrome signature 649 664 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 PRINTS Phytochrome signature 559 577 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 PRINTS Phytochrome signature 723 740 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 PRINTS Phytochrome signature 441 461 IPR001294 GO:0006355|GO:0009584
Rops11g01454 1178 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 231 401 IPR016132 -
Rops11g01454 1178 FunFam Phytochrome 416 546 - -
Rops11g01454 1178 Pfam PAS fold 80 198 IPR013654 GO:0006355
Rops11g01454 1178 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 894 958 IPR036097 GO:0000155|GO:0007165
Rops11g01454 1178 Gene3D - 416 589 IPR043150 -
Rops11g01454 1178 SMART pas_2 760 830 IPR000014 -
Rops11g01454 1178 SMART pas_2 629 696 IPR000014 -
Rops11g01454 1178 NCBIfam PAS domain S-box protein 634 749 IPR000014 -
Rops11g01454 1178 SMART HisKA_10 902 966 IPR003661 GO:0000155|GO:0007165
Rops11g01454 1178 CDD PAS 772 880 IPR000014 -
Rops11g01454 1178 Gene3D - 965 1095 IPR036890 -
Rops11g01454 1178 ProSitePatterns Phytochrome chromophore attachment site signature. 331 340 IPR013516 -
Rops11g01454 1178 CDD HisKA 903 958 IPR003661 GO:0000155|GO:0007165
Rops11g01454 1178 Gene3D PAS domain 625 749 - -
Rops11g01454 1178 SUPERFAMILY PYP-like sensor domain (PAS domain) 634 742 IPR035965 -
Rops11g01454 1178 MobiDBLite consensus disorder prediction 1 21 - -
Rops11g01454 1178 Gene3D - 212 572 IPR029016 -
Rops11g01454 1178 FunFam Phytochrome 774 882 - -
Rops11g01454 1178 ProSiteProfiles Histidine kinase domain profile. 909 1081 IPR005467 -
Rops11g01454 1178 MobiDBLite consensus disorder prediction 1 36 - -
Rops11g01454 1178 Pfam Phytochrome region 424 598 IPR013515 GO:0006355|GO:0009584
Rops11g01454 1178 PANTHER OS08G0260000 PROTEIN 75 963 - -
Rops11g01454 1178 SUPERFAMILY PYP-like sensor domain (PAS domain) 775 879 IPR035965 -
Rops11g01454 1178 CDD PAS 638 745 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01454 Rops-Chr11 21731858 21740009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01454 18 1076 Histidine Kinase Gene Family AT2G18790 76.075 0.0 1709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01454 K12121 - gmx:100799831 1937.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01454 11 21731858 21740009 Rops11g01454 11 21731858 21740009 ECH