Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01417 ATGTCCCATTTCAACAAGGGCGACACAGTAGAGGTAACCAAGTTCAACAACGGTGAATGCTGCTATTACTGCCCAGCGAGGGTGGTTCGACCACCCTCAAAAAACAAGAACTTGGTTTTCGTCGAGTACCTCACATTGTTGGGTTCATGTTCCGAGGAACAACCCACGAAACGTCTCAGGGGGTACGTCAATGTTGCTAACGTGAGGCCTAAGCTTCCTCACCAGCTTAACCCTTGGTTCAAGGTTGGTGACTCAGTTGATGCTTACAGTTCCGCCTTCAATGCTTGGTGCCCCGCCACTGTTACGGAAATACTCGAAAACTCTACCTACCTTGTCGATTTTCATGGCCCTGATCGTGATTCTGCCGCCGTTGATCACTGTAGCCTCCGCCTTCACAGGAATTGGGTCCCACCTTTCCCCCAACAACCCCAACAGGAGCTGTCTCTGGAGATGGTGACAAAGCCTGAAAATTCCAGGTTTAAGATCAAATACAGCAGGAAACCACGAAAGGAATCAAAGTTTGAAAAGGGGGAAATAGTGGAAGTCAACAGCGATGATGAAGGTTACAAGGGTGCTTGGTTTGTTGCTTCTATTGTTGATGTGATCGGAAAAGACAGGTTTCTAGTAGAATATAGGGACCTGACAACAGATGATGGCGCCCAGCTCTTGAAAGAAGAAACTGATGCAAGGTTTATTAGGCCCTGCCCTCCTGAAGTTCCATTTGTTGGTTCTTTCAAAAGATTCCAAGAAGTTGATGCATGGTACAATAATGGGTGGTGGGAAGGTGTGGTTCTTGAAGTACTGAATAGCAGAGAGTGTTTTGTTTCTTTCATAAACAATGACATATTGAAATTTGAAAATTCTAATCTAAGGCCTCATCAGGACTGGTTCAATGGAAAATGGGTCATGTCTTCCAAGAAGCCAAGTGAGCTTGTGAAGAAGTTTGGAGATGTGATGCTTAAAGCCAAGAATCTTATTGGAAATAGATTAATCATAAAATTTCGAAAGCCTAGTGAGCATGCAAAGGATCCTAGAGATGTAACAGCAAGGACCACAAACACCAGAAACAAATTCGTGTTACATTTCTGTAAAGGTGCAAAGGTAGAAGTCAGAAGCGATGAAGAAGGCTACCAAGGTGCCTGGTATACTGCCATTATTGTTGACTCTTTGCATAATGGCAAGTACTTGGTGGAGTATTTGACCCTGAAAACAGATGACTTATCTGAACAACTGAAAGAAGAAGCAGATGCTTCAGATATCAGGCCATATCCTCCAGATATCAATCATGTTCATCACTTTGCACTCAGTGAATGGGTTGATGTTTGGTATAATGAAGGGTGGTGGGTAGGTCAGGTATCTAGTGTTCTTCGTGGTTTCAAGTATAGGGTTTACTTTTGGCATACAAAGGAGGAGCTGGAATTTGACCATTGTCATCTGAGGCCTCATCAAGAATGGATTGATGGAAGATGGGTGCTTGCTTCTTTGGGTTGA 1491 0.4386 MSHFNKGDTVEVTKFNNGECCYYCPARVVRPPSKNKNLVFVEYLTLLGSCSEEQPTKRLRGYVNVANVRPKLPHQLNPWFKVGDSVDAYSSAFNAWCPATVTEILENSTYLVDFHGPDRDSAAVDHCSLRLHRNWVPPFPQQPQQELSLEMVTKPENSRFKIKYSRKPRKESKFEKGEIVEVNSDDEGYKGAWFVASIVDVIGKDRFLVEYRDLTTDDGAQLLKEETDARFIRPCPPEVPFVGSFKRFQEVDAWYNNGWWEGVVLEVLNSRECFVSFINNDILKFENSNLRPHQDWFNGKWVMSSKKPSELVKKFGDVMLKAKNLIGNRLIIKFRKPSEHAKDPRDVTARTTNTRNKFVLHFCKGAKVEVRSDEEGYQGAWYTAIIVDSLHNGKYLVEYLTLKTDDLSEQLKEEADASDIRPYPPDINHVHHFALSEWVDVWYNEGWWVGQVSSVLRGFKYRVYFWHTKEELEFDHCHLRPHQEWIDGRWVLASLG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01417 496 CDD Tudor_Agenet_AtDUF_rpt2_4 249 292 - -
Rops11g01417 496 CDD Tudor_Agenet_AtDUF_rpt1_3 174 237 - -
Rops11g01417 496 CDD Tudor_Agenet_AtDUF_rpt2_4 435 481 - -
Rops11g01417 496 Gene3D - 77 134 - -
Rops11g01417 496 CDD Tudor_Agenet_AtDUF_rpt1_3 362 425 - -
Rops11g01417 496 SMART agenet_At_2 172 240 IPR014002 -
Rops11g01417 496 SMART agenet_At_2 78 137 IPR014002 -
Rops11g01417 496 SMART agenet_At_2 360 428 IPR014002 -
Rops11g01417 496 SMART agenet_At_2 243 298 IPR014002 -
Rops11g01417 496 SMART agenet_At_2 431 487 IPR014002 -
Rops11g01417 496 Pfam Agenet domain 177 237 IPR008395 -
Rops11g01417 496 Pfam Agenet domain 7 73 IPR008395 -
Rops11g01417 496 Pfam Agenet domain 365 425 IPR008395 -
Rops11g01417 496 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 136 - -
Rops11g01417 496 Gene3D - 350 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01417 Rops-Chr11 21068206 21071829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01417 371 485 PHD Transcription Factor Family AT5G58610 30.370 1.31e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01417 - - adu:107483399 582.022