LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g01416	ATGATTGATTCTAAATCGCATAAGCAGCTGTCAGCAGAGGCAGAACCACTCTCTATTTTTGCTAATCCCTTTATCCCAAGCCATGCGAAGAGGGTGATAAATAGTTTGTCAATCCGAAATAGTGGTAAAATAAGAATAACGAGCCCTGTGGGAAGTTCAACATCTGGGAACATCTCAAACTCTTCGAAAGAGCAAGACAGGTTCCTCCCTATAGCCAACGTGAGTCGTATCATGAAAAGGACACTCCTAGCTAATGCTATAATCTCAAAGGAAGCAAAGGAACCAGTCCAAGAATGGGTCTCTGAGTTTATAAGCTTCATCACTGGTGAAGCATCTGACAAGTGCCAAAGAGAAAAGAGAAAAACCACTAATGGTGATGATCTTTTGTGGGCTATGACAACACTTGGCTATGATCTTCAGTTTTGA	426	0.4155	MIDSKSHKQLSAEAEPLSIFANPFIPSHAKRVINSLSIRNSGKIRITSPVGSSTSGNISNSSKEQDRFLPIANVSRIMKRTLLANAIISKEAKEPVQEWVSEFISFITGEASDKCQREKRKTTNGDDLLWAMTTLGYDLQF*	142

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops11g01416	141	Gene3D	Histone, subunit A	57	141	IPR009072	GO:0046982
Rops11g01416	141	PRINTS	CCAAT-binding transcription factor subunit A signature	96	114	-	-
Rops11g01416	141	PRINTS	CCAAT-binding transcription factor subunit A signature	115	133	-	-
Rops11g01416	141	SUPERFAMILY	Histone-fold	59	138	IPR009072	GO:0046982
Rops11g01416	141	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	56	138	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
Rops11g01416	141	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	68	132	IPR003958	-

Showing 1 to 6 of 6 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g01416	Rops-Chr11	21060106	21063582	Transposed

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g01416	51	138	CCAAT-HAP3 Transcription Factor Family	AT4G14540	78.409	5.49e-44	140

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Rops11g01416		CBFD_NFYB_HMF	1.8e-20	CL0012

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g01416	K08065		-	gmx:100797721	152.91

Showing 1 to 1 of 1 entries