Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01416 ATGATTGATTCTAAATCGCATAAGCAGCTGTCAGCAGAGGCAGAACCACTCTCTATTTTTGCTAATCCCTTTATCCCAAGCCATGCGAAGAGGGTGATAAATAGTTTGTCAATCCGAAATAGTGGTAAAATAAGAATAACGAGCCCTGTGGGAAGTTCAACATCTGGGAACATCTCAAACTCTTCGAAAGAGCAAGACAGGTTCCTCCCTATAGCCAACGTGAGTCGTATCATGAAAAGGACACTCCTAGCTAATGCTATAATCTCAAAGGAAGCAAAGGAACCAGTCCAAGAATGGGTCTCTGAGTTTATAAGCTTCATCACTGGTGAAGCATCTGACAAGTGCCAAAGAGAAAAGAGAAAAACCACTAATGGTGATGATCTTTTGTGGGCTATGACAACACTTGGCTATGATCTTCAGTTTTGA 426 0.4155 MIDSKSHKQLSAEAEPLSIFANPFIPSHAKRVINSLSIRNSGKIRITSPVGSSTSGNISNSSKEQDRFLPIANVSRIMKRTLLANAIISKEAKEPVQEWVSEFISFITGEASDKCQREKRKTTNGDDLLWAMTTLGYDLQF* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01416 141 Gene3D Histone, subunit A 57 141 IPR009072 GO:0046982
Rops11g01416 141 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Rops11g01416 141 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Rops11g01416 141 SUPERFAMILY Histone-fold 59 138 IPR009072 GO:0046982
Rops11g01416 141 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 56 138 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops11g01416 141 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 68 132 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01416 Rops-Chr11 21060106 21063582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01416 51 138 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.409 5.49e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops11g01416 CBFD_NFYB_HMF 1.8e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01416 K08065 - gmx:100797721 152.91