Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01407 ATGGTGGTGGAAACGAAAATCATCTGTCAGCAAAGCATTCCCGTTTTGGATGTCAAGTATCACCTTTGCGTTGGGCAAGAACATGGTGCTAAGGTTGAGGTTTCACCAACCTCGAATGTTGTCCCAATCTTTAGCCAAGTGCGGGTTTCCTCGGATTCGATTTCCGCTGAAACGTCTCGCATTGAATCGGCTGTGAGTTGCTCCGAGATGATTAAAGATTCTGTTTTGGAGACTCCTGCTACCAAGTTTGCCCCAAATGTTCGTTCTGGTAGCTGTGCTGATATTGGACCCAGGGGATCAATGGATGACGAACATATTCAAATAGATGATCTAGCTGCCCATCTTGGATTTGTGTTCAAATACCCTATACCAAGTGCGTTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAAGAATGCTATGAGATTATTTTTTGAAGATGCTAATATGCTAAAATCGTATGATACTGATGCACTTCTTCTAAAGAGGTTGGAAGATTCTCATCGGAGGGCTTTTTTAGGTGCAGACCTTGCCTTGGCTGATGAACAAAGTGTTAGCAGTTCCTGTGGGACAACCGCATTGACTGCCCTTATACTTGGAAGACATTTGCTGGTTGCTAATGCTGGTGATTGTCGAGCAGTTCTTTGTAGGCAAGGAGTAGCTGTGGAGTTGTCGCATGATCACAGACCAAGTTATTTGCCTGAACGCAGGAGAGTGGAGGAGTTAGGTGGTTTCATTGATGATGGGTATCTCAATGGTTATCTTTCTGTCACTCGTGCCCTTGGGGATTGGGACTTAAAATTTCCACTTGGTTCTGCATCGCCACTTATTGCTGAGCCAGATGTTCAAATGGTCACATTGACTGAGGATGATGAGTTTTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCAAGCCAGGATGCAGTTAGTCTTGTGCGGCGTGGATTAAGAAGGCATGATGACCCAGAACAATGTGCCAGGGAGCTAGTCAAGGAAGCATTGCGCCTACACACAACAGATAATCTTACTGTGATTGTTACTTGCTTGTCCTCTGTAGAAAGCATTGTCGAATCATGTCCACCCCAAAGGCGAAGATTCAGAGCTTGCTCTCTGTCTGAAGAGGCCCGAATCAGATTGAGGAGGTTGCTTGAGGGTAACTAA 1188 0.4512 MVVETKIICQQSIPVLDVKYHLCVGQEHGAKVEVSPTSNVVPIFSQVRVSSDSISAETSRIESAVSCSEMIKDSVLETPATKFAPNVRSGSCADIGPRGSMDDEHIQIDDLAAHLGFVFKYPIPSAFYAVFDGHGGPDAAAFVKKNAMRLFFEDANMLKSYDTDALLLKRLEDSHRRAFLGADLALADEQSVSSSCGTTALTALILGRHLLVANAGDCRAVLCRQGVAVELSHDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGSASPLIAEPDVQMVTLTEDDEFLIIGCDGIWDVMSSQDAVSLVRRGLRRHDDPEQCARELVKEALRLHTTDNLTVIVTCLSSVESIVESCPPQRRRFRACSLSEEARIRLRRLLEGN* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01407 395 Gene3D - 71 363 IPR036457 -
Rops11g01407 395 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Rops11g01407 395 FunFam Probable protein phosphatase 2C 22 72 361 - -
Rops11g01407 395 SMART PP2C_SIG_2 103 358 IPR001932 -
Rops11g01407 395 PANTHER PROTEIN PHOSPHATASE 2C 75 356 IPR015655 GO:0004722|GO:0006470
Rops11g01407 395 SMART PP2C_4 78 356 IPR001932 -
Rops11g01407 395 Pfam Protein phosphatase 2C 96 350 IPR001932 -
Rops11g01407 395 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Rops11g01407 395 SUPERFAMILY PP2C-like 83 359 IPR036457 -
Rops11g01407 395 CDD PP2Cc 87 358 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01407 Rops-Chr11 20820257 20822439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01407 1 394 PP2C-type Phosphatase Gene Family AT1G48040 56.608 4.66e-149 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01407 K14803 - gmx:100798957 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01407 11 20820257 20822439 Rops11g01407 11 20820257 20822439 ECH
Rops2g05016 2 89996180 89998316 Rops11g01407 11 20820257 20822439 PCT