Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01401 ATGGCAACAGCAGAGGCAGCTTCTGCTGGGCTTGGTCCCAGATATGCACCTGATGATCCCACCCTTCCGCAACCATGGAAGGGTTTGATTGATGGAAGTACTGGTTTGTTATATTATTGGAATCCTGAAACTAATGTTACTCAATATGAGAAACCAGCTCCCTTGGCCCCACCACCCTTGCCTTCCGGGCCTGCGCCTGTGCCAGCTTCTACACCGACCTTGGCGCCGATACCAGTGGCTCATTCGATGCAGCCAGGTGGGATGGGGCAACAACAGCATGGGCAGCAGTTGATGCAAGTGCAACCCTCACAACAGCATGGTCAATCGATGCCACAGCAGCAGAATCCCCTTGCGGGGCAGGTTACTCAGCAGCAACCCTCGCAGGTTGCTCAACCTGCACAGCAGCAGAACTCACAGCTTGTGCAGTCAATGCCGCAGCCGGGGTTACACCAGGCCAGGCAACCAATGATGCAGCCTCAGGGACAGCAAATGATGCAACCTCAAGGACAACAAGTTCAGCAAATGCATCATCAGATGCCTCCCCAGGCGATCCATCCCCAACATTATGGGCAAGGATCGTCGCAGGATCATAGCTCACATATTGTACAACCACAAGGACATCAATTCACTCCCCAGAACATGCATTATATGGCGTATCAACAAAACATGATGACATCCAGGCAACCAAACTCTCAGCAGATTCAGCCAAACATGAACACATCTGGGCAACCTAGTTCCCAGCAGATCCAGCATAACACCCATGGCCAGCCTTTTGAAAATCAACAAGATTTTAAACCAGGGTTTCCGAAGGTAGAGGAGGTTGAGTTTAAAAATGGAAGCCAAGTTGGAGTTTCACCATCCCAGTATCAACAAAGGAGTGCCTTGCCTGTTCAAAACAACCAGAACATTCCAGCTGAAGTTAGTTCTGGTCAAGTGCCTAATGTAGGTGTTAATGCTGGCCAACCACAACAATTCAGGGGCTTATCAGGCAATATGCAACAATCTCCCTCTGCAATGCAGCCACAGCAGGGTGGTTCTGATTTATTTTACCAACATGTTCCTAACTATCAAAGCCAGATGAGCCCAGGAATGATGCATCATGGTCATCCATCCAATGCCCATCCTATTGGTCAAAAGATGGGACATGAGGACAATTTACGTGGTAGAGCTGGGAATGAATATTACTATAATTCTAACAAAGAGATGCCGCCAATGGGTCGTCAGCAGTTGGATATGACACAAATGCCCATTTCAAGAAATCAGCAGGATATGAGGATGGGCAACACCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTATCGCTGGGAATGCCATGCATAACATGTTCACTCCACCTATAGTAGGACCTTCACCTCTCTCAAGTAACTCTCTGATGAGGCCTCCTTATATTGGATCTTCAGATGTTACTGATCTCTCATCAGCTGAAATATACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAATGTTCCACCCCCTTTCATGACATTTGATACTACTGGGTTCCCTCCAGAGATATTGAGAGAGATATACACTGCTGGCTTCTCAATTCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAGGGCAGAGACATCGTGGCAATTGCCAAGACAGGCTCTGGAAAAACATTAGGCTACTTAATCCCTGCCTTCGTTCTTCTTAGACAGCGACGTAATAATCCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGGACGATCTTCAAGAGTCTCTTGCACGTGCTTGTATGGTGGAGCATCTAAAGCTCTTCAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTCAGCAAGTTTCCCTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGGAAGATTGTGAATGAAATTCCACCACGTAGACAAACTCTCATGTACACAGCAACCTGGCCTAAAGAAGTTAGAAAAATTGCCAGTGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAGTGTAGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTTTGGAGCAGATCCTCAGATCCCAAGAACGAGGCTCTAAGGTCATAATATTTTGCTCCACGAAGAGGTTATGTGATCAGCTTGCGCGTAGTATTGGCCGCAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCAGAACTGGGAAGTCACCAATTTTGGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCACTGGAATTGAGGACTATGTACACCGTATTGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTATCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCAGGTGATTTAGTCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCCGAGTTAAGACAGATGGCTTTGCGTGGGCCACCAAACTTTGGAAAGGATCGGACTGGGATGAGTCGGTTTGACTCTGGTGGTGGTGTCGGTGGGCGCTGGGAGACTGGTGGACGTGGTGGCATGAGGGATGGCGGCTTTGGTGGTCGTGGAGGCATGAGGGATGGTGGCTTTGGTGGTCGGGGTGGCATGAGGGATGGTGGCAGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGCAGGTGGGAGAGGTGATTTCTTTTCTGGTAGGGGTAACAGGGGTAGGGGATATGGTGGCCCACGTGGGGGTCATGTTGGTTGGGGTAGGGGTGAACGTGGTCCCAATGATAGGTACAACATGGATGGGCGTGGCCAAGGGCGTGGACGTGGACGATTTGACAATAGAAGAGATGTTGGTTACAGAAATAGAGCCAGAAGTTATAGTGGTAGCCCCGAAAGAGTTAGAACATGGGATTACAGCAGAAGTCGCAGCAGAAGCAGAAGCAGGAGCAGCAGAAGCAGAAGTAGAAGCTGGAGCAGGGGTCGTAGTAGAAGCCGCAGCTGGTCTCGTGGTCGCAGCCGCAGCTATAGCCGTAGTATTAGTCCACGTCGGAGTCGCAGCCGTGGTCGCAGTTATAGCCGCAGCCACAGTCGTAGTCGCAGCTATGATAGGGGTGATAGGTCAGATCAACAGGTTTCTGATCAGAAGGATCTTAGGGCACCTGAAGCAGGAGCTTCTGATCCAAAAATGTTTCCCACGTCTCCCAGCACTCAAGGGAATTCTCTTTCGGGAACTGAACATGTGGAGCAGCTACCAGTTGTTGGGGTCACTGACCCTGATAATCCAGAGGCTGTAGTAGACCTTAGCCATCAACCACCTTCTGATATTTGA 3519 0.4868 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPLAPPPLPSGPAPVPASTPTLAPIPVAHSMQPGGMGQQQHGQQLMQVQPSQQHGQSMPQQQNPLAGQVTQQQPSQVAQPAQQQNSQLVQSMPQPGLHQARQPMMQPQGQQMMQPQGQQVQQMHHQMPPQAIHPQHYGQGSSQDHSSHIVQPQGHQFTPQNMHYMAYQQNMMTSRQPNSQQIQPNMNTSGQPSSQQIQHNTHGQPFENQQDFKPGFPKVEEVEFKNGSQVGVSPSQYQQRSALPVQNNQNIPAEVSSGQVPNVGVNAGQPQQFRGLSGNMQQSPSAMQPQQGGSDLFYQHVPNYQSQMSPGMMHHGHPSNAHPIGQKMGHEDNLRGRAGNEYYYNSNKEMPPMGRQQLDMTQMPISRNQQDMRMGNTPFQNVMPSGNGSGIAGNAMHNMFTPPIVGPSPLSSNSLMRPPYIGSSDVTDLSSAEIYCQQHEVTATGDNVPPPFMTFDTTGFPPEILREIYTAGFSIPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFVLLRQRRNNPLNGPTVLVLAPTRELATQIQEEVFKFGRSSRVSCTCLYGGASKALQLKELDRGADIVVATPGRLNDILEMKKIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLVKVLEGANQHVLPELRQMALRGPPNFGKDRTGMSRFDSGGGVGGRWETGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGGSFGGRGGMRDGAGGRGDFFSGRGNRGRGYGGPRGGHVGWGRGERGPNDRYNMDGRGQGRGRGRFDNRRDVGYRNRARSYSGSPERVRTWDYSRSRSRSRSRSSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISPRRSRSRGRSYSRSHSRSRSYDRGDRSDQQVSDQKDLRAPEAGASDPKMFPTSPSTQGNSLSGTEHVEQLPVVGVTDPDNPEAVVDLSHQPPSDI* 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01401 1172 MobiDBLite consensus disorder prediction 85 180 - -
Rops11g01401 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 536 710 IPR014001 -
Rops11g01401 1172 SMART ultradead3 524 727 IPR014001 -
Rops11g01401 1172 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 656 664 IPR000629 -
Rops11g01401 1172 Pfam DEAD/DEAH box helicase 529 699 IPR011545 GO:0003676|GO:0005524
Rops11g01401 1172 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Rops11g01401 1172 FunFam probable ATP-dependent RNA helicase DDX17 471 713 - -
Rops11g01401 1172 MobiDBLite consensus disorder prediction 986 1018 - -
Rops11g01401 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 883 IPR001650 -
Rops11g01401 1172 MobiDBLite consensus disorder prediction 1042 1091 - -
Rops11g01401 1172 Gene3D - 480 714 IPR027417 -
Rops11g01401 1172 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Rops11g01401 1172 MobiDBLite consensus disorder prediction 1126 1143 - -
Rops11g01401 1172 FunFam ATP-dependent RNA helicase RhlB 714 886 - -
Rops11g01401 1172 MobiDBLite consensus disorder prediction 52 73 - -
Rops11g01401 1172 MobiDBLite consensus disorder prediction 187 206 - -
Rops11g01401 1172 MobiDBLite consensus disorder prediction 1092 1119 - -
Rops11g01401 1172 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 476 883 - -
Rops11g01401 1172 MobiDBLite consensus disorder prediction 225 265 - -
Rops11g01401 1172 MobiDBLite consensus disorder prediction 1 27 - -
Rops11g01401 1172 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Rops11g01401 1172 Gene3D - 715 885 IPR027417 -
Rops11g01401 1172 SMART helicmild6 760 844 IPR001650 -
Rops11g01401 1172 MobiDBLite consensus disorder prediction 885 1172 - -
Rops11g01401 1172 SMART ww_5 21 54 IPR001202 GO:0005515
Rops11g01401 1172 MobiDBLite consensus disorder prediction 50 206 - -
Rops11g01401 1172 Pfam WW domain 22 52 IPR001202 GO:0005515
Rops11g01401 1172 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 505 533 IPR014014 GO:0003724
Rops11g01401 1172 MobiDBLite consensus disorder prediction 225 260 - -
Rops11g01401 1172 CDD SF2_C_DEAD 724 853 - -
Rops11g01401 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 859 IPR027417 -
Rops11g01401 1172 Pfam Helicase conserved C-terminal domain 736 844 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01401 Rops-Chr11 20757850 20765268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01401 493 864 Eukaryotic Initiation Factors Gene Family AT3G19760 34.853 1.78e-65 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01401 K12823 - gmx:100807830 1406.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01401 11 20757850 20765268 Rops11g01401 11 20757850 20765268 ECH